Detail information of GWHGAAEX017461/evm.TU.scaffold_81.64
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 6.00E-65 | MADS box transcription factor |
| nr | gi|189214319|gb|ACD85094.1| | 3.03E-150 | B-class MADS-box protein AP3-2 [Dendrobium hybrid cultivar] |
| Swissprot | tr|Q944S9|MAD16_ORYSJ | 4.00E-99 | MADS-box transcription factor 16 |
| trEMBL | tr|G2XK90|G2XK90_9ASPA | 1.00E-150 | B-class MADS-box protein AP3-2 {ECO:0000313|EMBL:ACD85094.1} (Fragment) |
| TAIR | AT3G54340 | 6.00E-65 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000087 | 1782543 | 1795029 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017461
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 2.10E-22 |
| PF01486.16 | K-box | 81 | 168 | 4.80E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.870 |
| SRR2545915 | Juvenile tuber | 5.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.270 |
| SRR5643514 | five period of Gastrodia elata | 1.080 | |
| SRR5643515 | five period of Gastrodia elata | 0.670 | |
| SRR5643524 | five period of Gastrodia elata | 0.730 | |
| SRR5643525 | five period of Gastrodia elata | 0.520 | |
| SRR5643528 | five period of Gastrodia elata | 0.580 | |
| SRR5643658 | five period of Gastrodia elata | 1.090 | |
| SRR5643659 | five period of Gastrodia elata | 0.050 | |
| SRR5643660 | five period of Gastrodia elata | 0.060 | |
| SRR5643661 | five period of Gastrodia elata | 0.190 | |
| SRR5643662 | five period of Gastrodia elata | 0.420 | |
| SRR5643663 | five period of Gastrodia elata | 0.130 | |
| SRR5643664 | five period of Gastrodia elata | 0.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.39 |
| Juven | Juvenile tuber | 0.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.97 | |
| Mother_Juven | Mother tuber of Juvenile | 2.83 |