Detail information of GWHGAAEX017464/evm.TU.scaffold_81.69


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|20088934|ref|NP_615009.1|8.00E-39hypothetical protein MA0035 [Methanosarcina acetivorans C2A]
KOGKOG23350tRNA-dihydrouridine synthase
nrgi|695060649|ref|XP_009418723.1|0PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q7XT07|DUS3L_ORYSJ3.00E-15tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
trEMBLtr|B4G0K9|B4G0K9_MAIZE0Uncharacterized protein {ECO:0000313|EMBL:ACF87902.1, ECO:0000313|EnsemblPlants:GRMZM2G108775_P01}
TAIRAT5G672200FMN-linked oxidoreductases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008719143601935904+
Transcript Sequence

Network for GWHGAAEX017464

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01207.16Dus1103993.50E-74
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0008033Biological ProcesstRNA processing
GO:0003824Molecular Functioncatalytic activity
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.890
SRR2545915Juvenile tuber14.160
SRP108465SRR5643513five period of Gastrodia elata17.550
SRR5643514five period of Gastrodia elata18.100
SRR5643515five period of Gastrodia elata19.360
SRR5643524five period of Gastrodia elata19.710
SRR5643525five period of Gastrodia elata28.860
SRR5643528five period of Gastrodia elata24.690
SRR5643658five period of Gastrodia elata32.610
SRR5643659five period of Gastrodia elata18.110
SRR5643660five period of Gastrodia elata19.340
SRR5643661five period of Gastrodia elata20.280
SRR5643662five period of Gastrodia elata21.560
SRR5643663five period of Gastrodia elata17.060
SRR5643664five period of Gastrodia elata22.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.480
SRR6049655Rhizomagastrodiae_C368-T10_good_112.460
SRR6049656Rhizomagastrodiae_C368-T07_good_123.290
SRR6049657Rhizomagastrodiae_C368-T07_good_121.770
SRR6049658Rhizomagastrodiae_C368-T04_good_122.390
SRR6049659Rhizomagastrodiae_C368-T04_good_125.350
SRR6049660Rhizomagastrodiae_C368-T01_good_122.240
SRR6049661Rhizomagastrodiae_C368-T04_good_118.520
SRR6049662Rhizomagastrodiae_C368-T01_good_122.220
SRR6049663Rhizomagastrodiae_C368-T01_good_124.620
SRR6049664Rhizomagastrodiae_C368-T10_good_121.250
SRR6049665Rhizomagastrodiae_C368-T10_good_121.250
SRP279888GastroGastrodia elata tuber 22.23
JuvenJuvenile tuber23.91
Mother_GastroMother tuber of Gastrodia elata 23.32
Mother_JuvenMother tuber of Juvenile 24.71