Gene detail

Detail information of GWHGAAEX017468/evm.TU.scaffold_81.74

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0653	5.00E-147	Cyclin B and related kinase-activating proteins
nr	gi\|672113699\|ref\|XP_008812187.1\|	0	PREDICTED: cyclin-B2-2-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q0D9C7\|CCB22_ORYSJ	0	Cyclin-B2-2
trEMBL	tr\|M0SZU0\|M0SZU0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P19110_001}
TAIR	AT1G20610	5.00E-147	Cyclin B2;3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	2066991	2070102	-

Transcript Sequence
>GWHTAAEX017468 GAGAGAGAGAGGGGAGAGAGAGAGAGCGAGCGGACAGAGAAGCTCTCTAATCTCTTTCAATGTCCGCCTTCGTTTAGTAGCACTTTTGTCTCTCACTGAATTAACCAACCGGCTCCCAGGTTTTGTCAAAGGATAAACTATAGAGAGGAATGGAGAACGATCGTGGTGCGATGAGATCTGAGAACTACCAAGGCTTTTTGATGGGGGGATCGAAGCATGGAAGGGATTTGGCGAACAATGTCAACAGAAGGGCTCTGAGAGACATCAATAATTTCACCAGTAATGTTCCTTATCCCTCGGCTGTTTTCAAGAGGGGGCTGAACGATGTGGCACCCATGGAAGACAAGAACATGTGTACTTTTGTTGGTCGAAGGCCTATTACAAGGAGGTTTGCTGCTGCTTTAGCTTATAAATCATTGAATTACCCCCAGAACGCTAGCTCTAGGCTCAAGCCAATAGGCAGCGAAAGGCAAAAGAGAACCCAACCAGTTCAAACTGAAAGTTATGTAGATGCTTTTGATTCCATAGATGTGGATGACTTTGTATCGCCCAACGACATACCTTTGCCAATGGTGGAAGAGATTGAAGAAATGGCTGACTGTGAGCTGAAGGAAGTAGAAATGGAGGATGTGGAAGCAAAATTACTAAAAGAAATCGATAGTTCTGATTCTAACAACCCTCTTGCTGTTGTTAGCTATGTGAATGAAATATATTCCTTTTACAGAGATGCAGAGGAATTGAGCTGTGTCCCTCCAAATTACATGTCAAACCAGATTGACATTAATGAGAGGATGCGTGCTATTTTGATCGATTGGTTGATCGAGGTTCATTATAAATTTGAACTGACGGATGAGACATTATTTCTAACGGTCAACTTAATAGATAGGTTCTTAGCTCGGCAGAATGTTATGAGGAAGAAGCTTCAGCTGGTTGGAGTGACTGCCATGCTTCTTGCATGCAAATACGAAGAAGTTCTTGTACCTGTTGTGGACGATCTTATCCTCATCTCTGACAAAGCCTACACGAGGGATGAAATTCTGCAAATGGAAAGTTTAATGGCAAACACTCTTCAATTCAATATGTCAGTACCAACTCCTTATGTTTTCATGAGGCGATTTCTCAAGGCTTCAATGTCTGATAGGAAGTTGGATCTCCTGACCTCTTACATCATAGAGCTGTGTCTCACTGAGTACGAAATGCTCAAATTTCGCCCTTCAATGCTTGCGGCCGCAGCGGTTTACACTGCCCAGTGCAGTCTGAATGGATTCAAGCACTGGACTAGAACCAGCGAGCTTTGCACCAGATATTCAGAAGACCAGCTCAGGGAGTGCTCAAGCATGATGGTGAATTTTCACCAACAAGCAGGAAGAGGAAAGTTGACTGGAGCTCATAAGAAATATAGCACGCATAAATTTGGATGCGCTGCAGCAAATTGTGTGCCTGCTCTTTTCTTGATGGACGTGAAGATGGACAACTAATAAAGGCCCAGAAAGAGGAGTCTCAGAGTGCTTTCCCCTTCTCGCAACACTTGTTTTATAGCGTGCAATGTAAGTTGCAGTTGGAGAGTAAGCCTAGCGTTTTGTTCCAACCCTAAGGTGTTGTTTCATTTTACCATAGTCTAATACATTTGTTTTGGGAGTTTTGTGCTTGAGTTAAACAAGCAGTTAGTTACAGGTGAAAGGAATAAGAAATAGAACTTGC

Network for GWHGAAEX017468

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.22	Cyclin_N	186	311	7.80E-46
PF02984.18	Cyclin_C	314	427	5.70E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.230
SRP064423	SRR2545915	Juvenile tuber	0.210
SRP108465	SRR5643513	five period of Gastrodia elata	3.130
	SRR5643514	five period of Gastrodia elata	7.390
	SRR5643515	five period of Gastrodia elata	2.560
	SRR5643524	five period of Gastrodia elata	4.050
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.090
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.100
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.00