Detail information of GWHGAAEX017470/evm.TU.scaffold_81.76


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|194334049|ref|YP_002015909.1|5.00E-12RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
KOGKOG42092.00E-109Splicing factor RNPS1, SR protein superfamily
nrgi|720044246|ref|XP_010269828.1|2.90E-121PREDICTED: polyadenylate-binding protein 2-like [Nelumbo nucifera]
Swissprottr|Q9FJN9|PABN2_ARATH6.00E-110Polyadenylate-binding protein 2 {ECO:0000303|PubMed:18479511}
trEMBLtr|A0A067JR63|A0A067JR63_JATCU2.00E-120Uncharacterized protein {ECO:0000313|EMBL:KDP22495.1}
TAIRAT5G652602.00E-109RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008722059872234891+
Transcript Sequence

Network for GWHGAAEX017470

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1941621.40E-15
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14396PABPN1, PABP2 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.960
SRR2545915Juvenile tuber33.830
SRP108465SRR5643513five period of Gastrodia elata33.310
SRR5643514five period of Gastrodia elata33.130
SRR5643515five period of Gastrodia elata30.160
SRR5643524five period of Gastrodia elata33.420
SRR5643525five period of Gastrodia elata23.340
SRR5643528five period of Gastrodia elata22.910
SRR5643658five period of Gastrodia elata24.220
SRR5643659five period of Gastrodia elata33.880
SRR5643660five period of Gastrodia elata30.980
SRR5643661five period of Gastrodia elata33.490
SRR5643662five period of Gastrodia elata25.590
SRR5643663five period of Gastrodia elata27.110
SRR5643664five period of Gastrodia elata23.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.910
SRR6049655Rhizomagastrodiae_C368-T10_good_156.130
SRR6049656Rhizomagastrodiae_C368-T07_good_140.340
SRR6049657Rhizomagastrodiae_C368-T07_good_126.870
SRR6049658Rhizomagastrodiae_C368-T04_good_131.760
SRR6049659Rhizomagastrodiae_C368-T04_good_128.710
SRR6049660Rhizomagastrodiae_C368-T01_good_134.740
SRR6049661Rhizomagastrodiae_C368-T04_good_131.840
SRR6049662Rhizomagastrodiae_C368-T01_good_148.720
SRR6049663Rhizomagastrodiae_C368-T01_good_146.410
SRR6049664Rhizomagastrodiae_C368-T10_good_161.660
SRR6049665Rhizomagastrodiae_C368-T10_good_161.660
SRP279888GastroGastrodia elata tuber 38.65
JuvenJuvenile tuber31.49
Mother_GastroMother tuber of Gastrodia elata 34.29
Mother_JuvenMother tuber of Juvenile 35.43