Detail information of GWHGAAEX017471/evm.TU.scaffold_81.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-163 | FOG: PPR repeat |
| nr | gi|743884182|ref|XP_010909614.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|O81908|PPR2_ARATH | 5.00E-164 | Pentatricopeptide repeat-containing protein At1g02060, chloroplastic (Precursor) |
| trEMBL | tr|M0U7P7|M0U7P7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP09370_001} |
| TAIR | AT1G02060 | 2.00E-163 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000087 | 2236688 | 2239111 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017471
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 122 | 150 | 0.013 |
| PF01535.19 | PPR | 155 | 184 | 0.083 |
| PF13041.5 | PPR_2 | 187 | 235 | 2.80E-16 |
| PF13041.5 | PPR_2 | 259 | 307 | 1.10E-15 |
| PF13041.5 | PPR_2 | 327 | 376 | 6.10E-14 |
| PF13812.5 | PPR_3 | 463 | 518 | 0.0014 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.680 |
| SRR2545915 | Juvenile tuber | 14.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.880 |
| SRR5643514 | five period of Gastrodia elata | 10.360 | |
| SRR5643515 | five period of Gastrodia elata | 10.140 | |
| SRR5643524 | five period of Gastrodia elata | 8.410 | |
| SRR5643525 | five period of Gastrodia elata | 15.750 | |
| SRR5643528 | five period of Gastrodia elata | 9.490 | |
| SRR5643658 | five period of Gastrodia elata | 13.220 | |
| SRR5643659 | five period of Gastrodia elata | 26.420 | |
| SRR5643660 | five period of Gastrodia elata | 31.440 | |
| SRR5643661 | five period of Gastrodia elata | 30.150 | |
| SRR5643662 | five period of Gastrodia elata | 36.460 | |
| SRR5643663 | five period of Gastrodia elata | 33.660 | |
| SRR5643664 | five period of Gastrodia elata | 39.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.04 |
| Juven | Juvenile tuber | 17.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.97 | |
| Mother_Juven | Mother tuber of Juvenile | 5.99 |