Gene detail

Detail information of GWHGAAEX017480/evm.TU.scaffold_81.86

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0167	7.00E-153	FOG: Armadillo/beta-catenin-like repeats
nr	gi\|743777578\|ref\|XP_010919224.1\|	0	PREDICTED: uncharacterized protein LOC105043395 [Elaeis guineensis]
trEMBL	tr\|K4AZB4\|K4AZB4_SOLLC	2.00E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g091740.2.1}
TAIR	AT2G45720	7.00E-153	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	2598253	2601008	+

Transcript Sequence
>GWHTAAEX017480 AGAGCCCGGGTTGCAAGAGTTCGATCTCCAGCAGAGAGAGTTCGACAGCTACAAGGACTTGGAGATTCCTTCCTTTCAAGCCATTAAGAAGAAAGCCAAAGAATCATTAGAAAGTCTGCCAGAGCGAAGGAAATCAGGTCTTGAGAGATTAATTCCCCTGTTTTCTTTGCCTTCAATCCAATCCTCGGTCCTCCGCCAGAGGAAGGCAAGCATTCCCCATGGCTGAAGAAGAAGCCTCCGATCCGGCAGATCAGTGGCTCGCCCGAGCCAGCCTCCTCCTCTCCTCTGCCCTGTCGAAATCTCATTCCGCCGCTTCCGCCACTCCGGGCTTCGCCGTCCGGTGGAATTCCGTGGCTTCGAAGCTGGGCCGCGTGTCCGCGTGCCTCTCCGACCTCTCCGCCCACCCCTTCTTCTCCAAGAACGCCCTCTGCCTGGAGCAGCTCCAGTCGCTGGCCTCCGCCCTCTCCGAATCCGTTGAATTCGCAGACCGCTTCGACCCGTCGGCCGCCGGAAAGCTCCAGGCGCAGAGCGACCTCGACTCCCTCTCCTCAAAACTTGACCTATGCCTCCGCGACTGCCGCCTCCTCATCGCCTCCGGATCCCTCTGCCAAACCCCCGCAGAGGAATTGCTGGCGAGGCTGCAGATCGGGAGCTCGGATGCCAGGCACTGTGCGCTCGACGGCGTGCTCGACGAGCTCCGGGGTGATAAGCAGGGCGTCTTCGCCTCCCTTACCCGCAGCAGCGCCGCCGCCTTAGTCTGCCTTCTCTCCTCCGTGAAGGTCAGGGAGAAGGCCGCCACAGCCATCTTCCATCTCGCGGAATCCGCCTTCTGCGCGGATTTGCTCGTCGAAGAATCCGCCCTCCCGCCGTTGATCCGGATGGCGGAATCCGGCAGCCCGGCCGGGACGGCGTCGCTCGAGAGGTTCTCGGTGACGGCGGGCTCCGCAAGGGCAATCGCGAAGGCAGGCGGAATCCGTCCGTTGATAGAGTGTTGCAAAGCCGGGGACTCCGCGGCCGCCGGTGTGCTCAGGAACCTGTCTATGATCGTGGAGCTGCGGCAAGGCCTGGCCGACGAGGGCGCTGTCGGAGCCATGGTCGGGCTTCTAGGGTCAGACGCGAGGGAGCAGGCCGCGGAGTTCCTGAAGAGCATGTCTTCCGGCGGCGACGGCCTGAGAAGGACCATTGTGCTGGAGGGTGGGATCCGCGGCCTGCTGGCTTACCTGGGGGAGCCGACGCCGCAGGAACCGGGGGCTGCCGCATTGCGGAACCTCGTCGGATCGGCCCCGGTGAACAGCCTGATCTCGCTCGGGCTCCTGCCAAGGCTCGCCCACGTCCTGGAGAACGGCCCGCCCGGGGCGCAGCAGGCTGCGGCTTCCACAATTTGCAGTGTAATTGGCTCCGACGACGAAATGAGGGTGCTGGTTTTGGAGCAAGGCTGCGTGGGTCTTTTTGTGTTGATGCTGGAGGGGAAGTCCGATGGGGTGAGGGAGGCCGCCGCACGGGCCCTTTCGGCTCTGATGAGCTGCAGGGCGATCCGCCGCGACGTGAAGAGGAACGGGAGGAGCGTGCCGAGTTTGGTCCAGCTGCTCGATCCGAGCCCGGCGAACACGGCGAAGAAGTACGCCGTGTCGTGCCTTCTGCCGCTGTCAGCGGGGAACAAGTGCAGGAAGGTGATGATTTCTCACGGCGCAATTGGGTACCTAAAGAAGCTAAGGGAGTTGGATGTTCCTGGTTCCAAGAGGCTGCTGGAGAGACTGGAAAAGGGAACTCTAAGAAGTTTATTTAGCAAGAAATAAGCTGTTATTTACTCTTTAAATTCTCGGGTCTGTTGTTTCATTGTCTCTATGAAACTTAACTTTCAATGAATGCTTCACCATTTCTCAATGGCTCTAACTGTTTTATTTATTGGAAGAAGTTAATCATCAATCAAAGGAGTCAGACCTATTCACATCTTAAGTTTATAAATTCAAGAATTC

Network for GWHGAAEX017480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00514.22	Arm	395	431	0.00012

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.430
SRP064423	SRR2545915	Juvenile tuber	0.170
SRP108465	SRR5643513	five period of Gastrodia elata	2.520
	SRR5643514	five period of Gastrodia elata	2.770
	SRR5643515	five period of Gastrodia elata	1.300
	SRR5643524	five period of Gastrodia elata	2.350
	SRR5643525	five period of Gastrodia elata	1.070
	SRR5643528	five period of Gastrodia elata	0.850
	SRR5643658	five period of Gastrodia elata	1.210
	SRR5643659	five period of Gastrodia elata	0.520
	SRR5643660	five period of Gastrodia elata	1.000
	SRR5643661	five period of Gastrodia elata	0.330
	SRR5643662	five period of Gastrodia elata	0.350
	SRR5643663	five period of Gastrodia elata	0.490
	SRR5643664	five period of Gastrodia elata	0.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.190
SRP279888	Gastro	Gastrodia elata tuber	3.03
	Juven	Juvenile tuber	7.42
	Mother_Gastro	Mother tuber of Gastrodia elata	3.81
	Mother_Juven	Mother tuber of Juvenile	3.53