Gene detail

Detail information of GWHGAAEX017483/evm.TU.scaffold_81.90

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428219655\|ref\|YP_007104120.1\|	5.00E-06	aminopeptidase P [Pseudanabaena sp. PCC 7367]
KOG	KOG1189	0	Global transcriptional regulator, cell division control protein
nr	gi\|359487575\|ref\|XP_002276824.2\|	0	PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera]
Swissprot	tr\|Q7X923\|SPT16_ORYSJ	0	FACT complex subunit SPT16
trEMBL	tr\|F6I4V8\|F6I4V8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61945.1}
TAIR	AT4G10710	0	global transcription factor C

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	2705682	2709057	+

Transcript Sequence
>GWHTAAEX017483 ATGGCTCCTGCGGCAGACCATAGAAATGGCAGCACAAAACCTTTGGCGTCCGGTTCAGCTGGTGCATACACAATTGATGTCGGTAACTTCAGCAACAGGTTGAAAGTGTTTTATACTCACTGGGGTAGACATAAGCTTGATTTTTGGGGAGCCTCAGATTCTATTGCAGTTGCAACACCTCCTCCATCTGATGATATTCGATATTTAAAATCTTCCGCCTTGCATATCTGGTTGTTTGGATATGAGTTTCCAGAAACAATCATGGTTTTCATGAACAAGAAGATTCATTTCTTATGCAGTTTGAAGAAGGCTGCCGTTCTGGAAACTGTAAAAAAATCTGCTAAGCTTGCTGTTGATGCTGATGTCATAATTCATGTAAAGCAAAAAGGTGATGATGCTTCTGCATTGATTGACGATTTGCTGCATGCCATTGATTCTCAAAGTGAATCTGGAAAACCTATTGTTGGCCGAATTCAACGAGAAGATCCAGAAGGGAAACTCATGGAAAGTTGGGTGGAGAAGCTGGCCACATCTAATGTGCAACTTTCTGATGTCACAGCCGGGCTTTCTGAACTGTTTGCTATAAAGGATCCCTCCGAGCTTCAGTGTGTGAGAAAAGCGGCGTATTTAGCTACTACGGCAATGAAAGATTATGTGATTCCGAAAGTTGAGCAGGCTATTGATGAGGAGAAGAAAGTCTCCCATTCAACTCTTATGGATGAAACAGAGAAGGCAATTCATGATCCTATGAAGTTGAAGGTCAAGCTCAAGGCTGAAAATGTTGATATATGCTACCCTCCAATTCTTCAGAGTGGGGGAAAGTTTGATCTGAGGCCCAGCGCAGCATGCAATGACGATTATCTCTACTACGAATCAGAAAGTGTGATTTTATGTGCACTCGGTGTACGCTATGGAAGCTATTGCTCGAATATTGCACGGACTCTTTTAATTGATGCGAATGCCGAACAGCTCAAAGCATACGAGGTTCTCCTCAAGGCACAGAATGCTGCGATAGGTGCTCTCAAGTCTGGGAACATGCTGAATTTTGCTTACAAAGCTGCTGTTAAAGTTGTTGAGAATGAGGCCCCCGAGCTTTTTCCAAATCTTTCTAAGACTGCAGGAACTGGGATTGGTCTTGAGTTCCGTGAGTCTGGATTGACCTTGAATGCAAAAAATGATCGTATTGTGAGTTCAGGAATGGTTTTCAATTGTTCTCTTGGATTTCAGAACCTGCAATCTCAGACAAACAACCCGAAAACTGAAACATTTTCTCTGCTTTTGGCTGACACGATTATAATTGGGAACGAGGAGAAACCTTCAGAAGTACTGACTTTACCTTGCTCCAAGGCTGTAAAGGATATTGCATATTCATTAACGGAAGAGGATGAGGTGGCAACCAAAAAGGTATCTCAGGCTACTGTTACTAAGGCTGCCTTATCTAAGGCATCCTTGAGGTCAGACAAGCATGATATAACAAAGGAAGAGTTACGGCGACAGCACCAAGCAGAGCTTGCCAGGCAGAAGAATGAGGAAACAGCTAGAAGGTTGACTGATGGCGGTTCTGCTCTTGGAACTACTCGTGGACCTGTGAAAACTTTGAATGAGATGACGACCTACAAAAATGTCAATGATCTACCTTTTTCAAAGGAAATTATGATCCAAGTAGATCAGAAGAATGAGGCTGTCCTAATTCCAATTTACGAGACCATTGTGCCTTTCCATGTGTCAACCATCAAAAGCGTTACTAGCAATCAAGATAACCGAACAACCACTGTTCGCATAATATTCAATGTCCCGGGAACTCCATTCACACCTCACGATGCCAACTCCCTCAAGCACCAGGGTGCTATATACCTGAAAGAAGTAAGCTTCCGATCAAAGGACCCAAGGCATAGCAGTGAGGTTGTGCAGTTGATAAAAATCCTTAGGAGGCAAGTGGCATCAAGGGAGTCAGAGAGAGCCGAGAGGGCTACTCTAGTTACTCAAGAGAAGCTTCAACTTGCAGGCAACAGAATGAAGCCAATAAAACTATTGGATCTATCGATACGACCAGCATTTCCTGGTCGTGGAAGAAAGCTCACTGGATCGTTGGAAGCTCATATCAATGGTTTTCGTTATTCTACATCGAAAATCGATGAGCGGGTGGATATCATGTATGGTAATATTAAGCATGCCTTCTTCCAGCCTTCAGAGAAAGAGATGATTACGCTGCTGCACTTCCGCTTGCATAATCACATTATGGTGGGCAACAAGAAGACCTTAGATATTCAGTTTTATGTGGAGGTGATGGATGTGGTTCAGACTGTCGGCGGAGCAAGGAGATCCGCTCTTGATCCTGATGAGATTGAGGAGGAGCAACGCGAAAAGGAGCGGAAGAACAAAATAAACCTGGAATTTCAGAACTTTGTAAATAAGGTGCATGATCACTGGGGACAACCCCAATTCAGAGATCTGGATCTTGAGTTTGATCAGCCTTTAAGAGAGCTTGGCTTCCACGGAGTTCCTCATAAAGCTTCATCCTTCATTGTCCCATCTTCAAGCTGCTTGGTTGAACTGATTGAGACACCACCTCTAGTGATCACATTGAGTGAGATTGAGATTGTTAATCTGGAGAGGGTTGGTCTCGGGCAGAAGAGCTTCGACATGGCCATTGTTTTCAAGGATTTTAGCAAGGATGTATTTCGCATAGATTCGATTCCTTCCTCATCTCTTGATGGAGTGAAGGAATGGCTGGATACTACTGATATCAAGTACTATGAGAGCAGGCTGAACTTGAATTGGCGACCAATTTTGAAAACTATTACAGATGATCCTGAAAAGTTCATCGAAGATGGCGGGTGGGAGTTTCTCAACTTGGAAGCCAGTGATTCGGACTCGGACGCCTCCGAGGAATCAGATCGAGGGTATGCGCCTTCCGATGTGGAGGTGGAATCTGAATCTGAAGATGATGGTAGTGATAGCGAGTCTTTGGTGGAGTCGGAGGATGAGGAGGAAGAAGATTCAGAGGAGGAGGATGAGGAGGATGAGGGAAAGACATGGGAAGAATTGGAGAAAGAGGCAAGCAAAGCTGATAGGGAGCGGGGCGATGAGTCCGACAGCGAAGAAGAGAGGAAATGGAGGAAAGCTAAAGCTCTGGGAAAATCGCATCCCCTCGATAGGAGAGATTCAAAGGGTCCCCCTCCCAAGAGGCCAAAGCTTAGTTTTAGCGGTTCGTTTTTCTCTTATCCTTGTTACTTCATCTGTTTGGATGGGAACTTATTATGTTATAATTACTTAAATTAA

Network for GWHGAAEX017483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14826.5	FACT-Spt16_Nlob	25	187	8.30E-46
PF00557.23	Peptidase_M24	203	433	4.70E-26
PF08644.10	SPT16	553	706	2.40E-50
PF08512.11	Rtt106	837	919	3.90E-15

Protein Sequence

>GWHPAAEX017483
MAPAADHRNGSTKPLASGSAGAYTIDVGNFSNRLKVFYTHWGRHKLDFWGASDSIAVATPPPSDDIRYLKSSALHIWLFGYEFPETIMVFMNKKIHFLCSLKKAAVLETVKKSAKLAVDADVIIHVKQKGDDASALIDDLLHAIDSQSESGKPIVGRIQREDPEGKLMESWVEKLATSNVQLSDVTAGLSELFAIKDPSELQCVRKAAYLATTAMKDYVIPKVEQAIDEEKKVSHSTLMDETEKAIHDPMKLKVKLKAENVDICYPPILQSGGKFDLRPSAACNDDYLYYESESVILCALGVRYGSYCSNIARTLLIDANAEQLKAYEVLLKAQNAAIGALKSGNMLNFAYKAAVKVVENEAPELFPNLSKTAGTGIGLEFRESGLTLNAKNDRIVSSGMVFNCSLGFQNLQSQTNNPKTETFSLLLADTIIIGNEEKPSEVLTLPCSKAVKDIAYSLTEEDEVATKKVSQATVTKAALSKASLRSDKHDITKEELRRQHQAELARQKNEETARRLTDGGSALGTTRGPVKTLNEMTTYKNVNDLPFSKEIMIQVDQKNEAVLIPIYETIVPFHVSTIKSVTSNQDNRTTTVRIIFNVPGTPFTPHDANSLKHQGAIYLKEVSFRSKDPRHSSEVVQLIKILRRQVASRESERAERATLVTQEKLQLAGNRMKPIKLLDLSIRPAFPGRGRKLTGSLEAHINGFRYSTSKIDERVDIMYGNIKHAFFQPSEKEMITLLHFRLHNHIMVGNKKTLDIQFYVEVMDVVQTVGGARRSALDPDEIEEEQREKERKNKINLEFQNFVNKVHDHWGQPQFRDLDLEFDQPLRELGFHGVPHKASSFIVPSSSCLVELIETPPLVITLSEIEIVNLERVGLGQKSFDMAIVFKDFSKDVFRIDSIPSSSLDGVKEWLDTTDIKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNLEASDSDSDASEESDRGYAPSDVEVESESEDDGSDSESLVESEDEEEEDSEEEDEEDEGKTWEELEKEASKADRERGDESDSEEERKWRKAKALGKSHPLDRRDSKGPPPKRPKLSFSGSFFSYPCYFICLDGNLLCYNYLN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	148.990
SRP064423	SRR2545915	Juvenile tuber	76.880
SRP108465	SRR5643513	five period of Gastrodia elata	53.480
	SRR5643514	five period of Gastrodia elata	45.180
	SRR5643515	five period of Gastrodia elata	49.620
	SRR5643524	five period of Gastrodia elata	44.530
	SRR5643525	five period of Gastrodia elata	41.100
	SRR5643528	five period of Gastrodia elata	48.510
	SRR5643658	five period of Gastrodia elata	41.470
	SRR5643659	five period of Gastrodia elata	58.150
	SRR5643660	five period of Gastrodia elata	65.540
	SRR5643661	five period of Gastrodia elata	52.240
	SRR5643662	five period of Gastrodia elata	58.230
	SRR5643663	five period of Gastrodia elata	58.110
	SRR5643664	five period of Gastrodia elata	60.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	76.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	97.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	92.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	120.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	91.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	92.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	66.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	77.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.820
SRP279888	Gastro	Gastrodia elata tuber	61.71
	Juven	Juvenile tuber	61.38
	Mother_Gastro	Mother tuber of Gastrodia elata	56.11
	Mother_Juven	Mother tuber of Juvenile	58.17