Detail information of GWHGAAEX017486/evm.TU.scaffold_81.92


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG40112.00E-80Transcription initiation factor TFIID, subunit TAF7
nrgi|727618149|ref|XP_010480059.1|1.19E-79PREDICTED: transcription initiation factor TFIID subunit 7-like [Camelina sativa]
Swissprottr|B9DG24|TAF7_ARATH9.00E-81Transcription initiation factor TFIID subunit 7
trEMBLtr|V4JWU3|V4JWU3_EUTSA2.00E-79Uncharacterized protein {ECO:0000313|EMBL:ESQ29940.1}
TAIRAT1G553002.00E-80TBP-associated factor 7

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008727495112774159+
Transcript Sequence

Network for GWHGAAEX017486

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04658.12TAFII55_N11351.10E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03132TAF7 Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0005669Cellular Componenttranscription factor TFIID complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms69.720
SRR2545915Juvenile tuber48.140
SRP108465SRR5643513five period of Gastrodia elata23.090
SRR5643514five period of Gastrodia elata27.340
SRR5643515five period of Gastrodia elata28.310
SRR5643524five period of Gastrodia elata29.090
SRR5643525five period of Gastrodia elata50.420
SRR5643528five period of Gastrodia elata47.520
SRR5643658five period of Gastrodia elata54.440
SRR5643659five period of Gastrodia elata32.750
SRR5643660five period of Gastrodia elata32.670
SRR5643661five period of Gastrodia elata37.380
SRR5643662five period of Gastrodia elata43.410
SRR5643663five period of Gastrodia elata32.520
SRR5643664five period of Gastrodia elata37.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_137.420
SRR6049655Rhizomagastrodiae_C368-T10_good_131.440
SRR6049656Rhizomagastrodiae_C368-T07_good_125.540
SRR6049657Rhizomagastrodiae_C368-T07_good_138.910
SRR6049658Rhizomagastrodiae_C368-T04_good_118.680
SRR6049659Rhizomagastrodiae_C368-T04_good_128.540
SRR6049660Rhizomagastrodiae_C368-T01_good_125.770
SRR6049661Rhizomagastrodiae_C368-T04_good_120.300
SRR6049662Rhizomagastrodiae_C368-T01_good_122.360
SRR6049663Rhizomagastrodiae_C368-T01_good_121.940
SRR6049664Rhizomagastrodiae_C368-T10_good_132.270
SRR6049665Rhizomagastrodiae_C368-T10_good_132.270
SRP279888GastroGastrodia elata tuber 42.88
JuvenJuvenile tuber28.18
Mother_GastroMother tuber of Gastrodia elata 46.17
Mother_JuvenMother tuber of Juvenile 31.13