Detail information of GWHGAAEX017496/evm.TU.scaffold_81.104
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20095029|ref|NP_614876.1| | 6.00E-45 | 30S ribosomal protein S15 [Methanopyrus kandleri AV19] |
| KOG | KOG0400 | 4.00E-98 | 40S ribosomal protein S13 |
| nr | gi|743854742|ref|XP_010941042.1| | 5.12E-102 | PREDICTED: 40S ribosomal protein S13 [Elaeis guineensis] |
| Swissprot | tr|P62302|RS13_SOYBN | 8.00E-103 | 40S ribosomal protein S13 |
| trEMBL | tr|Q9MAV9|Q9MAV9_PANGI | 2.00E-102 | Cytoplasmic ribosomal protein S13 {ECO:0000313|EMBL:BAA96366.1} |
| TAIR | AT3G60770 | 4.00E-98 | Ribosomal protein S13/S15 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000087 | 3002559 | 3011592 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017496
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08069.11 | Ribosomal_S13_N | 1 | 60 | 1.80E-32 |
| PF00312.21 | Ribosomal_S15 | 74 | 146 | 5.60E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02953 | RP-S13e, RPS13 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 125.790 |
| SRR2545915 | Juvenile tuber | 171.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 295.300 |
| SRR5643514 | five period of Gastrodia elata | 347.800 | |
| SRR5643515 | five period of Gastrodia elata | 277.860 | |
| SRR5643524 | five period of Gastrodia elata | 336.740 | |
| SRR5643525 | five period of Gastrodia elata | 144.880 | |
| SRR5643528 | five period of Gastrodia elata | 188.280 | |
| SRR5643658 | five period of Gastrodia elata | 107.820 | |
| SRR5643659 | five period of Gastrodia elata | 239.130 | |
| SRR5643660 | five period of Gastrodia elata | 220.870 | |
| SRR5643661 | five period of Gastrodia elata | 261.490 | |
| SRR5643662 | five period of Gastrodia elata | 199.360 | |
| SRR5643663 | five period of Gastrodia elata | 198.900 | |
| SRR5643664 | five period of Gastrodia elata | 184.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 274.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 464.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 333.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 232.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 231.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 202.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 286.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 252.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 403.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 373.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 471.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 471.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 285.58 |
| Juven | Juvenile tuber | 311.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 159.87 | |
| Mother_Juven | Mother tuber of Juvenile | 150.78 |