Detail information of GWHGAAEX017497/evm.TU.scaffold_81.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256821679|ref|YP_003145642.1| | 2.00E-27 | 30S ribosomal protein S5 [Kangiella koreensis DSM 16069] |
| KOG | KOG2646 | 1.00E-143 | Ribosomal protein S5 |
| nr | gi|695012040|ref|XP_009392761.1| | 0 | PREDICTED: uncharacterized protein LOC103978635 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0SID9|M0SID9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P27730_001} |
| TAIR | AT1G64880 | 1.00E-143 | Ribosomal protein S5 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000087 | 3055065 | 3093242 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017497
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00333.19 | Ribosomal_S5 | 346 | 410 | 1.20E-17 |
| PF03719.14 | Ribosomal_S5_C | 423 | 493 | 3.80E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02988 | RP-S5, MRPS5, rpsE | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 56.130 |
| SRR2545915 | Juvenile tuber | 55.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.380 |
| SRR5643514 | five period of Gastrodia elata | 32.040 | |
| SRR5643515 | five period of Gastrodia elata | 27.360 | |
| SRR5643524 | five period of Gastrodia elata | 33.110 | |
| SRR5643525 | five period of Gastrodia elata | 27.740 | |
| SRR5643528 | five period of Gastrodia elata | 20.940 | |
| SRR5643658 | five period of Gastrodia elata | 24.530 | |
| SRR5643659 | five period of Gastrodia elata | 37.730 | |
| SRR5643660 | five period of Gastrodia elata | 36.240 | |
| SRR5643661 | five period of Gastrodia elata | 33.650 | |
| SRR5643662 | five period of Gastrodia elata | 36.230 | |
| SRR5643663 | five period of Gastrodia elata | 36.920 | |
| SRR5643664 | five period of Gastrodia elata | 35.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.65 |
| Juven | Juvenile tuber | 44.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.78 | |
| Mother_Juven | Mother tuber of Juvenile | 29.30 |