Gene detail

Detail information of GWHGAAEX017498/evm.TU.scaffold_81.108

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	6.00E-74	Transcription factor, Myb superfamily
nr	gi\|743830405\|ref\|XP_010934413.1\|	9.89E-98	PREDICTED: protein ODORANT1-like [Elaeis guineensis]
Swissprot	tr\|Q50EX6\|ODO1_PETHY	3.00E-82	Protein ODORANT1
trEMBL	tr\|W5FQ66\|W5FQ66_WHEAT	6.00E-89	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5DL_0B2C5ADF6.1}
TAIR	AT1G66230	6.00E-74	myb domain protein 20

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	3111660	3114105	-

Transcript Sequence
>GWHTAAEX017498 ATATATATATATATATATAAAGTTGTTACTTTTTAATTGCCACCGCTTATAATTGAGTCATTACCTTTCGTAAATTACACTATTACTCTAAGAAAATATTAAAATATCTTATATGAAGTAGATTAAAACAGTAGCAACAATAAAGTCTTAGGTCTGTTCGATTGTGGATGATCAAATAGAAGCGCCTTTCTGAGCTCCAAAGTGGGTTGTAATGATTTCTTCCCATTAATATGATCAAAATTGATGAACCCAATTTTGTGAGTCTTAACCATTTGATTACAGCATGGAGGAGGCCCTAATAAAATAATAAAGCAACTGAAAGGTGGCCAGTGAGACATCCACCTCAAGGAAGCAAATCCTTCCTTAACCTGCGCCAGCATATGAAGCAAAGTGGAGATGACGAAAGCAGTGATGGAATGATGGAGTAAGATTGCAACAAAGGAAAATAAAACTCAAAATAGCACTCTTAAATCCAGCTCAACCAAGAGGCAATTAATACTTTACTAATTACTCCATCTCCTTCGTGTTAGCCCATCATTAGCGCCAGCCATCGCCTTCCCAATTAACAATCTTAGAAAAAAAGTCTAAGTAAAAAAAAAAATTCAGACAAGTCGTGCATCCTGACTCTCTTTTAGTTCTCGGGCAGCTTTCAAAAAGTAGTTCTATAAAGATAAATATAAAAGGGGAGGGGTGGGTGAGGGTTGGTGGAGGGTCCTTTGGACTCCAGAAGGAATTGAGCTAGAGCACAGCTAGAGATATGGGAAGGCAGCCCTGCTGCGATAAGCTCAAGGTGAAGAGGGGTCCGTGGACGGCAGAGGAGGACAAGAAGCTCGTCTCCTTCATCCTCGGGAACGGCGGCCGTTGCAGCTGGCGGACGGTGCCGAAGCTCGCCGGCCTCCTGCGTTGCGGCAAGAGCTGCCGTCTTCGGTGGACCAACTATCTCCGTCCCGACCTTAAAAGAGGCCTTCTCTCCGAGGCCGAGGAAAAGCTCGTCGTAGATCTTCATGCCACCCTTGGCAACAGGTGGTCCAAAATTGCCTCAAAACTTCCGGGACGAACAGATAATGAGATAAAGAATCATTGGAACACTCATATAAAGAAAAAGCTTCTAAAAATGGGAATCGATCCAGTCACTCACAAGCTCCTCAATGATCAAACCAGCCCAACCGCAACGGCGTCGCCAAATTCGACGATTACCGATGATGAAAAATTCAACAAAAAACAAGGGATGTTCGACCATGAAAATGCCACCAAACAAATATCACTAGAAGAGAGAGTAATTTGCCCTCATCAAAACTACTCAACTTCTATTAAGAGAGATGATGATGGGGTGGATTGTTTGTGGGATGATGAAATACACTTTATTGACAAATTATGGAGTTCTCCTATAAGTGCAGAAGCATGGGAGGGGAGCTCAGAGTGGCTATTGGATTTCCAAGACTTTGGCATTGGAGATTTGGAGTTTGCAGATGATCAGATTAAACTAAACTAAGTACAAATAAAAAGCTTATGAAGTTTAGTCTGAATAATGTAAAGTGTAAGAATTTGATTTTATTGTTATTATTTTTTGGGGATTGGATTATCAAATTTTACTCAAATATATATATATATATATAT

Network for GWHGAAEX017498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	14	62	4.10E-13
PF00249.30	Myb_DNA-binding	71	112	2.60E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.160
SRP064423	SRR2545915	Juvenile tuber	8.680
SRP108465	SRR5643513	five period of Gastrodia elata	5.120
	SRR5643514	five period of Gastrodia elata	7.910
	SRR5643515	five period of Gastrodia elata	6.040
	SRR5643524	five period of Gastrodia elata	7.000
	SRR5643525	five period of Gastrodia elata	162.430
	SRR5643528	five period of Gastrodia elata	139.220
	SRR5643658	five period of Gastrodia elata	220.000
	SRR5643659	five period of Gastrodia elata	4.030
	SRR5643660	five period of Gastrodia elata	3.220
	SRR5643661	five period of Gastrodia elata	4.100
	SRR5643662	five period of Gastrodia elata	6.480
	SRR5643663	five period of Gastrodia elata	6.850
	SRR5643664	five period of Gastrodia elata	4.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.970
SRP279888	Gastro	Gastrodia elata tuber	10.34
	Juven	Juvenile tuber	4.61
	Mother_Gastro	Mother tuber of Gastrodia elata	11.28
	Mother_Juven	Mother tuber of Juvenile	6.32