Gene detail

Detail information of GWHGAAEX017499/evm.TU.scaffold_81.109

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	1.00E-142	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672161934\|ref\|XP_008800795.1\|	0	PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Phoenix dactylifera]
Swissprot	tr\|Q93Z92\|RING4_ARATH	1.00E-149	E3 ubiquitin-protein ligase At4g11680
trEMBL	tr\|V4TQ35\|V4TQ35_9ROSI	7.00E-164	Uncharacterized protein {ECO:0000313\|EMBL:ESR53800.1}
TAIR	AT4G11680	1.00E-142	Zinc finger, C3HC4 type (RING finger) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	3134760	3169813	+

Transcript Sequence
>GWHTAAEX017499 TTCGATAATGTCTTATAGCGCGCGAGACGGCGCGAGGGTCCAGTTGGTTGAACAGAAAATTTTTAACGAAATTCAGGAAGGGTGGCCGTACAGTATTCCATTCTCCCTCGCACCGGGATCCTTTGCTAACAACCATTATCGTTGCCTCTTTTGTTAAAAAGGCGACCCTCGTCTCCGCGATCAGCCAGATTTTCTAGGGTTTTCCGTTGTCTTCCGGTATCTTCAACTTAATCCTCTGAAATCGTCAATTTTAGTCCCCCCTTCGTTTCACATGTCGGCAACGAGGACGCTCAACCCTCTGGCTGGAGCCACCGTCGACCCGGTTCCTCTGCTTCGTCCGCGGGGCGGTGATGGGGACGAGCGTGGATGGAGGCCGCCGCGGAGACCGAGCTTGAGGGGCGCGGCGCGATTTTTGCGGAGGGCTAGTAACCGGCGGATGATGAGGGAACCTTCTGTGCTCGTGAGAGAGACGGCTGCGGAACAGTTGGAGGAGCGGCAGAGTGATTGGGCGTACTCGAGGCCTGTGGTTTTTCTCGACATCCTGTGGAACATGGCGTTCGTGGCTGTGGCTATTGGGGTTCTTGTTATGAGCCGTGAAGAGAGGCCGACAATGTCTCTGAGGCTGTGGATCACTGGATATGCATTGCAGTGTGTGGTTCATATGGCCTGTGTCTGTGTGGAGTATCAGAGTAGGCACCCGCCACCGCCAATGGGATTGGCGGACAGTGGGGAGGGGAGCTTCGTTACCTGGAGTGATCAGGGAAGCTCTGGCTCAAGCTCTTCTAGGAATTTGGAGAGTGGAGTGGAAAGTGGAAATTATGATTCGGAGCAGGATGATTCGGATGATGAAGGTACAAGTATTGCAAAACATTTGGAGTCTGCCAACACAATGTTCTCATTCATATGGTGGATCGTTGGTTTCTATTGGGTGTCTGCTGGAGGTCAAGTTTTGACTCGTGATGCTCCTCAGCTCTACTGGCTCTGCATCGTGTTTCTGGCTTTTGACGTGGTCTTTGTTGTTTTCTGTGTTGCATTGGCATGCATTATTGGTATTGCTGTGTGCTGCTGCCTACCATGCATCATTGCTATTTTATATGCTGTGGCAGATCAAGAGGGGGCATCAGAAGAAGACATTCGCAACTTACCAAAGTTCAAATTTCGAAGGACTGGTGATTTTGAAATGCTCGGTGAGATATCAACGTCTTCTGGTGGTGTAATGACGGAATGTGGGGATCCTTATAACGAGATTTTTCTTTCATATGAGAATGCAGAGTGCTGCATCTGCCTGTCTGCATATGACGATGGGGTCGAGCTGCGGCAACTTCCATGCTTTCATCATTTCCATAGTGCTTGCATCGACAAATGGCTTCACATCAATGCCACTTGCCCTCTCTGCAAGTACAACATTATAAAGTGCAGCAACAATGCCTCTAGAGACCAAGTATAGAAGCTCAACACCATTCTCTCTCTTTCTATATATGTATGCATATATATTTCTCTTCTTTCCTGGGTGATGCTGCTGGAATTCTCACTTTTGTTCATGCTTGATTGACCATTTATCAATCTGCTTTCTTATAAATATGAATTTTCATTATTTTCTAGTACATGGCTGTTTCCTTGGGTTTATTATATTTGCAAGGAACAGTCAATCATTCACATTGTAATGTATATATACTTTTGCTCTGCGAGTCCTCTGTTCCAAGGAAAGCAGAAGAAGATTGAGATTTTGGAGCGAAAGTCTTTGCAAATGTGAATCCTTTTTATATATAAAATGAAAGGTGCAGCACTTATTTTTCTTTCCATTTTTTTTTTCTTATACTACCAGAACAACATTTGCAATTAGTTTTAGGAATTTTAAAGGGATCTCATTTGGAAAAAAATCAACAAGGTATCTATCATGCCCATTTAAAACGAAAAACGAATGAATCAAACAAAGGTTCGCAGAAGAAGATGATTTGGTGCTGCGCTTATCGCGTGCCGTCGTCATCCCGGACTTCGGCGCCGCAGGACCGCCGCGAACGAGAACAGAACGTCACCCAACGCCGGCGGCCCTCCGCCGTCCGAATGGCAGGTGACGCATCGAACCCCAGATCCAACGGCTCCCGCTTCACCTGGGTAGGCTGTTCCTCTTCGCCGTCGTCATTCTCCGAGCGCGCCCTCTTTTCCCCAATGGAAACGCCGAACAGCCTAGGGTTGTTCACCGAGGATGACCCCTCCTCCTCTTCTACTTCTTCTTCTTCT

Network for GWHGAAEX017499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	334	376	1.60E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.630
SRP064423	SRR2545915	Juvenile tuber	15.150
SRP108465	SRR5643513	five period of Gastrodia elata	19.300
	SRR5643514	five period of Gastrodia elata	17.030
	SRR5643515	five period of Gastrodia elata	18.120
	SRR5643524	five period of Gastrodia elata	18.680
	SRR5643525	five period of Gastrodia elata	31.380
	SRR5643528	five period of Gastrodia elata	30.840
	SRR5643658	five period of Gastrodia elata	34.110
	SRR5643659	five period of Gastrodia elata	18.380
	SRR5643660	five period of Gastrodia elata	17.030
	SRR5643661	five period of Gastrodia elata	19.290
	SRR5643662	five period of Gastrodia elata	20.280
	SRR5643663	five period of Gastrodia elata	18.410
	SRR5643664	five period of Gastrodia elata	17.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.060
SRP279888	Gastro	Gastrodia elata tuber	17.34
	Juven	Juvenile tuber	23.05
	Mother_Gastro	Mother tuber of Gastrodia elata	28.54
	Mother_Juven	Mother tuber of Juvenile	22.11