Detail information of GWHGAAEX017500/evm.TU.scaffold_81.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 1.00E-69 | Heat shock transcription factor |
| nr | gi|743828411|ref|XP_010933854.1| | 1.47E-91 | PREDICTED: heat stress transcription factor B-2c [Elaeis guineensis] |
| Swissprot | tr|Q6Z9C8|HFB2B_ORYSJ | 1.00E-74 | Heat stress transcription factor B-2b |
| trEMBL | tr|M5X1X7|M5X1X7_PRUPE | 2.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:EMJ19939.1} |
| TAIR | AT4G11660 | 1.00E-69 | winged-helix DNA-binding transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000087 | 3169540 | 3170686 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017500
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 30 | 119 | 7.90E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.090 |
| SRR2545915 | Juvenile tuber | 8.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.690 |
| SRR5643514 | five period of Gastrodia elata | 17.890 | |
| SRR5643515 | five period of Gastrodia elata | 15.100 | |
| SRR5643524 | five period of Gastrodia elata | 13.460 | |
| SRR5643525 | five period of Gastrodia elata | 10.210 | |
| SRR5643528 | five period of Gastrodia elata | 11.120 | |
| SRR5643658 | five period of Gastrodia elata | 16.930 | |
| SRR5643659 | five period of Gastrodia elata | 29.830 | |
| SRR5643660 | five period of Gastrodia elata | 19.450 | |
| SRR5643661 | five period of Gastrodia elata | 31.540 | |
| SRR5643662 | five period of Gastrodia elata | 28.120 | |
| SRR5643663 | five period of Gastrodia elata | 27.660 | |
| SRR5643664 | five period of Gastrodia elata | 27.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.67 |
| Juven | Juvenile tuber | 24.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.48 | |
| Mother_Juven | Mother tuber of Juvenile | 35.28 |