Gene detail

Detail information of GWHGAAEX017506/evm.TU.scaffold_81.117

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428771231\|ref\|YP_007163021.1\|	1.00E-33	Cl- channel voltage-gated family protein [Cyanobacterium aponinum PCC 10605]
KOG	KOG0474	0	Cl- channel CLC-7 and related proteins (CLC superfamily)
nr	gi\|695028020\|ref\|XP_009401373.1\|	0	PREDICTED: putative chloride channel-like protein CLC-g isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P60300\|CLCG_ARATH	0	Putative chloride channel-like protein CLC-g
trEMBL	tr\|M0T124\|M0T124_MUSAM	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}
TAIR	AT5G33280	0	Voltage-gated chloride channel family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	3357569	3368817	-

Transcript Sequence
>GWHTAAEX017506 GAAGGGAAGACGCATCTGATGCACGCTTTGTGTATGATTCATGAAAGAAAAAGAGCAAAAGGACGGAGGTTGGGCTTGAGAGGAAAAGAATTGAAGTCGTTTGGAAATGAAGTTGCTATTGCAAATTCTTTCGTTGGGAAAGAAAAACTTGCGGTTATTTTTCCGCTCTCTGTCACCCTTGGCTGGCAAACGACAAAGGCGAGAGCATAGGAAGGCTTTTTCTTCCCAACTTCTTCGCTTGGTTTAGTACCACTCCTCGCCATCCAATCTCTTCCTTCCATTATGTATCAAGAGTAAGAAGAAGAATCACCGGAGAGATAGAGCGAAAGAGGGATGGCGATCAAAGCCGCGGACATTGAAGCCGAGCCCCTTATTGGCGATCGCAGCCGCAGCATCCCCAAATTGACGTCCCAAGTGGCTCTCGTTGGCTCCCGAGTTTCCCCTATCGAAAGCCTTGATTTCGAGATTGCGGAGATCGAGCTCCTAAAGAAGGATGGCGGGATCGAGTATTTGCTCATTAAATGGGCTCTCTGCTTCCTGATTGGCGTCTTCTCCGCCTTCGTGGGATTCTGCATCAACCTCGCCATCGAGAACATCGCAGGCGTGAAATTCGTCGTCACATCCAACATGATGCTTGCCAATAAGTATCTTTGGGCATTTGGGATTTTCGGAGCTTCGAATTTGGTGCTGACGATGTTTGCTGTGATCATCACTGCCTACGTTGCGCCCGTCGCAGCCGGATCCGGGATTCCAGAAGTGAAGGCTTATTTGAATGGCATTGATGCTCCGGAAATTTTCTCATTTCGGACTCTTGCTGTAAAGATTGTTGGTTGTATTGCTATTGTATCATCATCACTTCACGTGGGTAAGGCAGGTCCAATGCTGCATAGCACAGCATGCATTGCTTTTTTGCTGGGGCAGGGAGGACCTTGTAAATATCTCCTGACATGCAGATGGTGTAGTTGCCTCAAAAATGACAGGGACCGACGAGATCTCGTGACATGTGGAGCAGGAGCCGGGATTGCTGCTGCCTTTCGGGCTCCTATTGGTGGTGTGCTTTTTGTTCTTGAATCGTTATCTTCATGGTGGAGATCTGCATTACTATGGCGGGCATTTTTTACAACCGCAGTTGTTGCAGTTGTTCTTAGGGCACTTATTGATTTCTGCAAAAGTGGCAAGTGTGGCTTGTTTGGAAATGGAGGACTTATAATGTTTTATGTGACTGCTGATAGTGTTTCCTATCATTTGGTGGACTTACCCCCATTTATTGTCCTTGGTGTTGTTGGTGGCATACTTGGGAGTTTATATAATTTTCTTATAGTCAAAGTACTTCGAATTTACACTCACATCAACGAGAAAGGCCGTGCATATAAGCTTCTTCTCGCTGCATGCGTCTCCATTTTCACATCATGCTGTCTCTTTGGATTACCATGGCTTGCTACTTGTAGAGCATGCCCAGGTGGCATATCTGAAGCATGTCCAACAATAGGAAGATCTGGAAACTTCAAGAAGTTTCAGTGCGCCATGGATCACTACAATGATTTAGCTAGCTTATTCTTCAACACCAATGATGATACAATAAGAAATCTTTACAGCGCTGGTACAGATAGGGTCTTCCGTAAATACTCTATCCTTGTGTTTCTTGTCACATCATATTTTCTCGGAATTGTTAGCTATGGTCTTGTAGCTCCTTCCGGCCTTTTTGTGCCTGTAATCTTAACCGGTGCAGCTTATGGACGCCTCATCGGAATGCTTATGGGCTCGCACTCAACTCTAGATCATAGCCTTTTTGCAGTTCTCGGTTCTGCATCTTTTCTCGGCGGATCGATGAGAATGACAGTTTCCGTATGCGTTATCCTTCTTGAACTAACGAATAATCTCTTATTACTTCCTCTTGTAATGTTAGTTGCTCTCATATCAAAAACTGTGGCCGACTGCTTTAATACCAGCATCTATGACATGCTTGTCAGATTGAAAGGCTTTCCTTTTCTTCAAGGATATGCAAATCCCTTCATGAGGCAACTAACCGTTCGTGAGGTTGTTAGAGGTCCTTTACATATGTTCAATGGCATCGAAAAAGTGAGTAACATAGTTCACATTTTAATGACAACTCATCATAACGGATTTCCTGTGATAGAGAAAACTTCATTTTCAGAGTCTCCCACACTTGATGGCTTAATTCTTCGTTCCCACCTTCTCATGCTTCTCAAGAAAAAATGTTTCATATCTTCTCAGTTCTCAGATCAAATTATTAATCCTTCTGAGCAGTTGTCAGCTAATGAATTTGCAAGCCTCTGCTCAGGCGGGCCCATTGATTTAGATGATATTATGTTGACGACCGAAGAGATGGAGATGCTTGTTGATTTGCATCCATTCATAAATGCTTCACCTTATACTGTTGTTGAGACGATGTCTTTGGCAAAAGCTCACATACTTTTTCGTGAAGTTGGCTTAAGGCACCTTCTTGTTATTCCAAAGATCAATTCTATGATGCCTGTGGTGGGAATATTGACAAGGCATGATTTTATGACTGAGCATGTTCTTGGGTTGCACCCTTTTCTGATTAAAGGAAGGAAAAAGCTATTTCAATCCAGGAAATAAACTAACTTTTCAGAGATATTTGCTGATAAAATAAAAACAAGATTTTTGCTGCTGTTATTGGGTTTTAGATAATGGCGAGCAGAAGGATTGATCCTTTTTTCTGCACTACT

Network for GWHGAAEX017506

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00654.19	Voltage_CLC	119	534	5.40E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0006821	Biological Process	chloride transport
GO:0005247	Molecular Function	voltage-gated chloride channel activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.800
SRP064423	SRR2545915	Juvenile tuber	2.570
SRP108465	SRR5643513	five period of Gastrodia elata	1.860
	SRR5643514	five period of Gastrodia elata	1.200
	SRR5643515	five period of Gastrodia elata	2.940
	SRR5643524	five period of Gastrodia elata	2.060
	SRR5643525	five period of Gastrodia elata	2.600
	SRR5643528	five period of Gastrodia elata	3.150
	SRR5643658	five period of Gastrodia elata	2.050
	SRR5643659	five period of Gastrodia elata	0.780
	SRR5643660	five period of Gastrodia elata	0.330
	SRR5643661	five period of Gastrodia elata	0.540
	SRR5643662	five period of Gastrodia elata	0.970
	SRR5643663	five period of Gastrodia elata	1.110
	SRR5643664	five period of Gastrodia elata	0.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.280
SRP279888	Gastro	Gastrodia elata tuber	0.64
	Juven	Juvenile tuber	0.28
	Mother_Gastro	Mother tuber of Gastrodia elata	6.34
	Mother_Juven	Mother tuber of Juvenile	0.85