Detail information of GWHGAAEX017508/evm.TU.scaffold_81.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|283781652|ref|YP_003372407.1| | 8.00E-26 | serine/threonine protein kinase [Pirellula staleyi DSM 6068] |
| nr | gi|672195489|ref|XP_008776554.1| | 0 | PREDICTED: putative receptor protein kinase ZmPK1 [Phoenix dactylifera] |
| Swissprot | tr|P17801|KPRO_MAIZE | 0 | Putative receptor protein kinase ZmPK1 (Precursor) |
| trEMBL | tr|V4USA4|V4USA4_9ROSI | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
| TAIR | AT2G19130 | 6.00E-118 | S-locus lectin protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000087 | 3756473 | 3760537 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017508
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01453.23 | B_lectin | 71 | 164 | 3.80E-27 |
| PF00954.19 | S_locus_glycop | 248 | 311 | 6.80E-09 |
| PF08276.10 | PAN_2 | 353 | 378 | 1.50E-05 |
| PF00069.24 | Pkinase | 511 | 781 | 4.20E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_SD-2b |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048544 | Biological Process | recognition of pollen |
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.890 |
| SRR2545915 | Juvenile tuber | 0.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.340 |
| SRR5643514 | five period of Gastrodia elata | 3.830 | |
| SRR5643515 | five period of Gastrodia elata | 2.500 | |
| SRR5643524 | five period of Gastrodia elata | 3.430 | |
| SRR5643525 | five period of Gastrodia elata | 7.110 | |
| SRR5643528 | five period of Gastrodia elata | 16.130 | |
| SRR5643658 | five period of Gastrodia elata | 6.940 | |
| SRR5643659 | five period of Gastrodia elata | 0.500 | |
| SRR5643660 | five period of Gastrodia elata | 0.270 | |
| SRR5643661 | five period of Gastrodia elata | 0.250 | |
| SRR5643662 | five period of Gastrodia elata | 0.150 | |
| SRR5643663 | five period of Gastrodia elata | 0.150 | |
| SRR5643664 | five period of Gastrodia elata | 0.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.17 |
| Juven | Juvenile tuber | 0.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.05 | |
| Mother_Juven | Mother tuber of Juvenile | 7.04 |