Detail information of GWHGAAEX017513/evm.TU.scaffold_81.136
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390942898|ref|YP_006406659.1| | 9.00E-28 | putative multicopper oxidase [Belliella baltica DSM 15883] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|672163093|ref|XP_008801379.1| | 0 | PREDICTED: laccase-7-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SR40|LAC7_ARATH | 0 | Laccase-7 (Precursor) |
| trEMBL | tr|V4USE8|V4USE8_9ROSI | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
| TAIR | AT3G09220 | 0 | laccase 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000087 | 4457443 | 4464299 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017513
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 33 | 145 | 3.50E-42 |
| PF00394.21 | Cu-oxidase | 159 | 308 | 6.60E-34 |
| PF07731.13 | Cu-oxidase_2 | 413 | 547 | 4.30E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0046274 | Biological Process | lignin catabolic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0052716 | Molecular Function | hydroquinone:oxygen oxidoreductase activity |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.960 |
| SRR2545915 | Juvenile tuber | 3.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 85.590 |
| SRR5643514 | five period of Gastrodia elata | 32.450 | |
| SRR5643515 | five period of Gastrodia elata | 16.670 | |
| SRR5643524 | five period of Gastrodia elata | 16.050 | |
| SRR5643525 | five period of Gastrodia elata | 22.490 | |
| SRR5643528 | five period of Gastrodia elata | 15.690 | |
| SRR5643658 | five period of Gastrodia elata | 5.810 | |
| SRR5643659 | five period of Gastrodia elata | 52.160 | |
| SRR5643660 | five period of Gastrodia elata | 45.480 | |
| SRR5643661 | five period of Gastrodia elata | 24.920 | |
| SRR5643662 | five period of Gastrodia elata | 10.870 | |
| SRR5643663 | five period of Gastrodia elata | 7.680 | |
| SRR5643664 | five period of Gastrodia elata | 25.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 120.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 708.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 245.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 174.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 118.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 118.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 246.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 246.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.66 |
| Juven | Juvenile tuber | 310.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.36 | |
| Mother_Juven | Mother tuber of Juvenile | 47.99 |