Gene detail

Detail information of GWHGAAEX017516/evm.TU.scaffold_82.2

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262196624\|ref\|YP_003267833.1\|	3.00E-10	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOG	KOG0118	7.00E-78	FOG: RRM domain
nr	gi\|695069113\|ref\|XP_009381524.1\|	1.40E-133	PREDICTED: UBP1-associated protein 2B-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LES2\|UBA2A_ARATH	2.00E-78	UBP1-associated protein 2A
trEMBL	tr\|M0U8Z2\|M0U8Z2_MUSAM	6.00E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP13830_001}
TAIR	AT3G56860	7.00E-78	UBP1-associated protein 2A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000078	122969	130198	+

Transcript Sequence
>GWHTAAEX017516 TAAACTGATATTAATTAAGATTTAGTAATTAAAATCATAATTATAAATCTTTTAAAAATAAACAGTTCCCTAAAATATTAGATAAGTGCATCACTTTGCTCATTAAAGAAGCAAGGTTTCGGCCCAGTAACGATTGGGCCCTCTGATCAGGTACTTCATTCACCAACTTATATTGAAACATCAGTACGCAGACACAACAAACCCTAGCCAAAAAGCTTATCCCTTCCGTCTCAATGGCATCCCTGAAGAAGCGAAAAGCTGAGCATGACTCTGAAATCAAACCGCATCATGCGGCCGTAGCGTACATCCGGCAGCCCGACGACGATGCGGCTGCGGCTGTCGGCGCAGCCGCATCAGACTCAGACGCTGACTACGAAGACGAGGAGGAAGACGTCCGCAAGCTTCTGGAGCCTCTCTCCAAAGATCAGCTGACCTCCCTCCTCGTCTCCGCTTCTGGCCGAAATTCAGCCACCCTCGCCGAGATTCGAGGGCTGGCAGACCTCGACGCCTCTCATCGGAAGCTCTTCGTCCATGGCCTCGACTGGAACACGTCCACCGAAGGCCTGCGCGCCGCATTTTCTCGCTACGGTGAAATCGTTGAGTGCCGCGTTGTTTTGGACCGCTCTACCGGCCGATCCAAGGGGTACGGCTTCATCCTCTTTCGCAATCGCTCTTCCGCTCGTCGTGCTCTCCGCAAGCCCCAAAAGCTGATCGAAAGCCGAATGGCCTCCTGCCAGCTCGCCAGCACTGGCCCTGTCCCGAGCCCTAACCCTAGCAATTACCTTAACGCTGCTTCCAATCATAATACTCCCCACAGCTCTGCCGATAATCTTATTCGGAAGGTCTACGTTGGAAACGTGCACTCCGACATAGACCCTCACCGCCTCCACGCATTCTTCTCGCAGTACGGAGATATCGAAGAGGGCCCGCTCGGGTTCGATCGCCTCAGCGGCAAGTCGAAGGGATTTGCGATTTTCGTCTACAAAACTTGTGAGGGAGCGAGAAAGGCGTTGGAGGAGACGAACAAGAACTTTGATGGGCATCACCTTGTCTGTCAAAAGGCTACGGATAGCAATAAGGCAAAGGCTTCAGCACCGGTTGGCAACAGTGCAGGTGGATTAGCGGTAGCTGCTCCCAACGTTCCGGCAAGCTTTGCTGGTTTCAATGGAGCTGCTGCTTATGGCGGGCAGCTTGTACAATCTGACATGGGCTTGGCGCAACAGGCAGCTATGCTTGGACAGGGGTTTCTTGGGCAGGCTATGCCTGCAAATGCTGCTGTACTTGCCATGCTTGCGGCCACAGGACAGAATCAATCAGCCTTTGGCATCACTCCAGCAATGCTTGCATCACTGAATCCTGCTCTCGCAGGAGCATTGGCTGCCGGAGCAGCTCCAGCTGCTCTTTCTCAGACACAAGGAACTCTCTCGTTGCAGGGATATGGAATGGGGACTTCTGGATATCAAAATCCAGGGCTGCAAGGACCTCCTGGGTTCCAAGGGCCTCCTGGATTTCAAGGTGCTGCAGGTTTTCAGGGGAATTCACCACAAGTGGGAGCGCATCAAGGCAGTAACACGGGCCATACGGCAGTGCAAAGGTCTTCCATGGGTTCTATGAGTGGGTTTGGTCTTCACTAGCTGCGGTTGAAGTGGTCTAGTTGTGTACTGGCTTGACTTGGCATGTAAAATGGCTCATTGGCTGAGCGTTTTGAGCCACGTTGCAGTGATTGAGCTAGCCTTGATTTAAAATGATTGTGTATATAATTTAATGTATTAAGTGGCATAATTTCATTAATATTAAATGTAAATTGCCTAGTTATAAATGTTTTATAGGCATTATTTTCATGGCACAACTACTCTTTTGATATTACAGTATCGGGTGTCAGACAGCTAGATGTTGATCACACTTCATAGCAAGAGATCTACAAATTTCATCGATTGATGATGTCAGAGGGGATCAAAATATCAGAGCTTTAAATGTAGTAAATATATGGGCCGATGAAACTGTCGCAGTTGACCCAAAGGTTCAGGCACTGGGGTGCCGCAGATGAGATAGATATAAATGCATAGGAAGCCAAGTGGAGGAGGCATTGATTTTGGAAGAAAGGTGGATAAAGGTTTGTACATGTCTTGTTATGGATTTACTCAACAGAACACCTTAGAAGACCTATTTGATGATTGAGCACACTTTTTGACATTCAAAAGCTATGTTTATTTTATAGATAATCATATGTTTTGCAGGGATGTCTTCTTTAGATGTTTGAAGCTATGAGCACACTTTTTGACATTCAAAAGCTATGTTTATTTTATAAATAATCA

Network for GWHGAAEX017516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	97	157	2.30E-15
PF00076.21	RRM_1	204	270	4.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.030
SRP064423	SRR2545915	Juvenile tuber	27.330
SRP108465	SRR5643513	five period of Gastrodia elata	40.220
	SRR5643514	five period of Gastrodia elata	41.520
	SRR5643515	five period of Gastrodia elata	35.730
	SRR5643524	five period of Gastrodia elata	38.820
	SRR5643525	five period of Gastrodia elata	38.170
	SRR5643528	five period of Gastrodia elata	32.550
	SRR5643658	five period of Gastrodia elata	53.470
	SRR5643659	five period of Gastrodia elata	39.170
	SRR5643660	five period of Gastrodia elata	44.100
	SRR5643661	five period of Gastrodia elata	37.580
	SRR5643662	five period of Gastrodia elata	40.620
	SRR5643663	five period of Gastrodia elata	41.120
	SRR5643664	five period of Gastrodia elata	38.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	68.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	74.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	67.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	81.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	84.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	74.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	64.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.730
SRP279888	Gastro	Gastrodia elata tuber	48.38
	Juven	Juvenile tuber	46.99
	Mother_Gastro	Mother tuber of Gastrodia elata	47.51
	Mother_Juven	Mother tuber of Juvenile	52.10