Detail information of GWHGAAEX017518/evm.TU.scaffold_82.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG12673.00E-45Mitochondrial transcription termination factor, mTERF
nrgi|672168958|ref|XP_008804497.1|1.67E-95PREDICTED: uncharacterized protein LOC103717770 [Phoenix dactylifera]
trEMBLtr|T1L780|T1L780_TRIUA3.00E-69Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_00257-P1}
TAIRAT5G649503.00E-45Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000078187018188508-
Transcript Sequence

Network for GWHGAAEX017518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02536.13mTERF813542.50E-33
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilymTERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003690Molecular Functiondouble-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.410
SRR2545915Juvenile tuber20.770
SRP108465SRR5643513five period of Gastrodia elata3.700
SRR5643514five period of Gastrodia elata4.820
SRR5643515five period of Gastrodia elata2.980
SRR5643524five period of Gastrodia elata2.930
SRR5643525five period of Gastrodia elata1.550
SRR5643528five period of Gastrodia elata1.890
SRR5643658five period of Gastrodia elata0.880
SRR5643659five period of Gastrodia elata8.850
SRR5643660five period of Gastrodia elata11.110
SRR5643661five period of Gastrodia elata9.910
SRR5643662five period of Gastrodia elata12.180
SRR5643663five period of Gastrodia elata12.190
SRR5643664five period of Gastrodia elata12.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.420
SRR6049655Rhizomagastrodiae_C368-T10_good_15.750
SRR6049656Rhizomagastrodiae_C368-T07_good_15.510
SRR6049657Rhizomagastrodiae_C368-T07_good_13.350
SRR6049658Rhizomagastrodiae_C368-T04_good_12.130
SRR6049659Rhizomagastrodiae_C368-T04_good_12.130
SRR6049660Rhizomagastrodiae_C368-T01_good_12.500
SRR6049661Rhizomagastrodiae_C368-T04_good_14.270
SRR6049662Rhizomagastrodiae_C368-T01_good_13.940
SRR6049663Rhizomagastrodiae_C368-T01_good_12.130
SRR6049664Rhizomagastrodiae_C368-T10_good_15.620
SRR6049665Rhizomagastrodiae_C368-T10_good_15.620
SRP279888GastroGastrodia elata tuber 8.62
JuvenJuvenile tuber3.79
Mother_GastroMother tuber of Gastrodia elata 1.33
Mother_JuvenMother tuber of Juvenile 1.47