Detail information of GWHGAAEX017519/evm.TU.scaffold_82.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG12674.00E-43Mitochondrial transcription termination factor, mTERF
nrgi|672168958|ref|XP_008804497.1|6.99E-94PREDICTED: uncharacterized protein LOC103717770 [Phoenix dactylifera]
trEMBLtr|M8B3Q7|M8B3Q7_AEGTA1.00E-66Uncharacterized protein {ECO:0000313|EMBL:EMT11362.1}
TAIRAT5G649504.00E-43Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000078215187216341-
Transcript Sequence

Network for GWHGAAEX017519

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02536.13mTERF841391.80E-08
PF02536.13mTERF1493555.00E-24
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilymTERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003690Molecular Functiondouble-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.790
SRR2545915Juvenile tuber2.740
SRP108465SRR5643513five period of Gastrodia elata2.850
SRR5643514five period of Gastrodia elata3.370
SRR5643515five period of Gastrodia elata2.590
SRR5643524five period of Gastrodia elata2.550
SRR5643525five period of Gastrodia elata0.520
SRR5643528five period of Gastrodia elata0.610
SRR5643658five period of Gastrodia elata0.110
SRR5643659five period of Gastrodia elata4.230
SRR5643660five period of Gastrodia elata4.750
SRR5643661five period of Gastrodia elata3.600
SRR5643662five period of Gastrodia elata3.350
SRR5643663five period of Gastrodia elata4.450
SRR5643664five period of Gastrodia elata3.480
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.960
SRR6049655Rhizomagastrodiae_C368-T10_good_18.490
SRR6049656Rhizomagastrodiae_C368-T07_good_14.210
SRR6049657Rhizomagastrodiae_C368-T07_good_12.340
SRR6049658Rhizomagastrodiae_C368-T04_good_12.690
SRR6049659Rhizomagastrodiae_C368-T04_good_12.490
SRR6049660Rhizomagastrodiae_C368-T01_good_14.010
SRR6049661Rhizomagastrodiae_C368-T04_good_13.290
SRR6049662Rhizomagastrodiae_C368-T01_good_17.400
SRR6049663Rhizomagastrodiae_C368-T01_good_15.060
SRR6049664Rhizomagastrodiae_C368-T10_good_14.540
SRR6049665Rhizomagastrodiae_C368-T10_good_14.540
SRP279888GastroGastrodia elata tuber 4.28
JuvenJuvenile tuber3.51
Mother_GastroMother tuber of Gastrodia elata 1.47
Mother_JuvenMother tuber of Juvenile 1.54