Detail information of GWHGAAEX017521/evm.TU.scaffold_82.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|192359696|ref|YP_001981315.1| | 7.00E-92 | aldose 1-epimerase [Cellvibrio japonicus Ueda107] |
| KOG | KOG1604 | 9.00E-130 | Predicted mutarotase |
| nr | gi|695028060|ref|XP_009401394.1| | 8.37E-176 | PREDICTED: aldose 1-epimerase-like [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0T112|M0T112_MUSAM | 6.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P23370_001} |
| TAIR | AT3G47800 | 9.00E-130 | Galactose mutarotase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000078 | 414986 | 428208 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017521
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01263.19 | Aldose_epim | 31 | 350 | 6.90E-83 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019318 | Biological Process | hexose metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016853 | Molecular Function | isomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.600 |
| SRR2545915 | Juvenile tuber | 31.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.230 |
| SRR5643514 | five period of Gastrodia elata | 34.710 | |
| SRR5643515 | five period of Gastrodia elata | 39.560 | |
| SRR5643524 | five period of Gastrodia elata | 35.600 | |
| SRR5643525 | five period of Gastrodia elata | 49.280 | |
| SRR5643528 | five period of Gastrodia elata | 47.550 | |
| SRR5643658 | five period of Gastrodia elata | 38.600 | |
| SRR5643659 | five period of Gastrodia elata | 44.820 | |
| SRR5643660 | five period of Gastrodia elata | 53.460 | |
| SRR5643661 | five period of Gastrodia elata | 50.500 | |
| SRR5643662 | five period of Gastrodia elata | 39.680 | |
| SRR5643663 | five period of Gastrodia elata | 44.860 | |
| SRR5643664 | five period of Gastrodia elata | 33.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.69 |
| Juven | Juvenile tuber | 23.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.45 | |
| Mother_Juven | Mother tuber of Juvenile | 16.28 |