Detail information of GWHGAAEX017524/evm.TU.scaffold_82.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-22 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|330865104|gb|AEC46975.1| | 0 | somatic embryogenesis receptor-like kinase [Ananas comosus] |
| Swissprot | tr|Q94AG2|SERK1_ARATH | 0 | Somatic embryogenesis receptor kinase 1 (Precursor) |
| trEMBL | tr|H6SU43|H6SU43_ANACO | 0 | Somatic embryogenesis receptor-like kinase 1 {ECO:0000313|EMBL:AFA53652.1} |
| TAIR | AT1G71830 | 0 | somatic embryogenesis receptor-like kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000078 | 518103 | 565246 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017524
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 34 | 73 | 5.20E-11 |
| PF00560.32 | LRR_1 | 173 | 189 | 0.49 |
| PF00069.24 | Pkinase | 310 | 580 | 3.30E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-II |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 47.940 |
| SRR2545915 | Juvenile tuber | 44.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.500 |
| SRR5643514 | five period of Gastrodia elata | 43.900 | |
| SRR5643515 | five period of Gastrodia elata | 43.260 | |
| SRR5643524 | five period of Gastrodia elata | 45.840 | |
| SRR5643525 | five period of Gastrodia elata | 81.340 | |
| SRR5643528 | five period of Gastrodia elata | 61.070 | |
| SRR5643658 | five period of Gastrodia elata | 70.070 | |
| SRR5643659 | five period of Gastrodia elata | 58.940 | |
| SRR5643660 | five period of Gastrodia elata | 60.140 | |
| SRR5643661 | five period of Gastrodia elata | 62.950 | |
| SRR5643662 | five period of Gastrodia elata | 57.240 | |
| SRR5643663 | five period of Gastrodia elata | 59.090 | |
| SRR5643664 | five period of Gastrodia elata | 61.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 47.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 47.85 |
| Juven | Juvenile tuber | 53.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 78.61 | |
| Mother_Juven | Mother tuber of Juvenile | 60.33 |