Gene detail

Detail information of GWHGAAEX017541/evm.TU.scaffold_82.49_evm.TU.scaffold_82.50

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521462574\|ref\|YP_008149444.1\|	3.00E-35	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
KOG	KOG0061	1.00E-158	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|672135636\|ref\|XP_008791489.1\|	0	PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 11-like [Phoenix dactylifera]
Swissprot	tr\|Q8RXN0\|AB11G_ARATH	7.00E-166	ABC transporter G family member 11
trEMBL	tr\|Q6K4D2\|Q6K4D2_ORYSJ	0	Putative ABC transporter {ECO:0000313\|EMBL:BAD22237.1}
TAIR	AT1G17840	1.00E-158	white-brown complex homolog protein 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000078	2169741	2175189	+

Transcript Sequence
>GWHTAAEX017541 TATGTATAAATATACTTCAAAAACTTTCAATATTTTTGTATGAGAGGCACAGACACAGTAGGTAATTGCAATTCTACATAAAAGTATGACAGCCATTGATTCTACTCCATCGGTGCTTAGATGGCACCCAAATACTCCGTCACCGCAGACCCTCGTTGGCAGTAGAAAAAGTTCGCTCTTTCCGTTTGCCGGTTCTCTTCCTGCATCTCTTTCTGGGCTCAAGGTTTGTCAGGATGATGCCGCCGGTGAACGGAGCGAGTCTTTGCCCTCGCTAGAAAGTGCCTCTCACGCCAATCCCATCTTTCTCACATGGGAGAATTTACAGGTTTTTGTTTCCAGCACGCCGCTGCTTTCAGGGCTAACTGGGCTGGCCCAGCCCAAAGAGCTGCTTGCTATTATCGGCCCCTCTGGTTGCGGCAAGTCCACCCTCCTTGATGCGCTTGCTGGACGATTGGCATCTAATCTTAGGCAAACAGGAGAAATACTTATCAACGGCCAAAAGCAAGCTCTATCGTTCGGCACCTCGGCATATGTGGCACAAGATGATGTCCTCATGACAACCCTAACAGTAAGAGAAGCCATACAGTACGCCGCAGAGTTACAGCTCCCCTCTTCAATGAGGCGCTCCGCAAAGTTGATGCGTGCCGAGAAACTCATCGAGGAGATGGGACTGGCATCAGTCGCCGATGTTCAAATTGGCGGTCGAAGCTCAAGGAAGGGAATAAGCGGGGGGCAAAAGAGGAGGGTCAGCATTTGCATGGAGATTATAACATCCCCCAAGCTCTTATATCTGGACGAGCCAACCAGCGGGCTTGACAGCGCCGCCGCCTTCCATGTCATGAACTGTATTGTTAAGTTGGCGGCAATGAAACACATGACAGTCATAGCCGCTGTGCACCAACCTGGATCTGAATTATTTGAGATATTTCATTCCATTTGTGTTCTTGCTTATGGAAAGACCGTCTTCTTTGGCCCTCGTACTGCTGCACCTGAGTTCTTCGCTTTGAATGGATTCCCCATTCCGAGCCACAAAAATCCATCAGATCACTACCTAAAAACCATCAACAAGGATTTTGACAAGGACATTGAAGAAGGGGACGATAGTCTTATCACAACCGCATCAGAAGCCATCGATTTACTCACTCGGTCATACAGTTCAAGCATCACTTCCCAACAATTACTAATGCAGATTAATGATATACGCACAATGAAAGTCAAGGCTGCGAAGAAGAGGAAACAAGCTAGCTTCTTGATGCATTGCGCCGTGCTCACTAGAAGATCTTTAGTTAACATGTGCAGAGATTTGGGTTATTATTGGCTTCGATTCGCAATATACATTGCCATGTGTCTGACCATCGGCACAATCTTCTACCAAATTGGCCGTAGTTATGACTCGATTCAGGCCAGAGGCTCCATGCTTTCATTTATAGCTGCATTCCTAACATTTATGGCAGTTGGCGGCTTCCCATCCTTTGTGGAAGACATGAAGATCTTCAAAAGAGAGAGATTGAATGGATACTATGGGGTTGTTGCATTCACAATTGCCAACACCGTCTCCGCTACCCCTTACCTGGCATTAATCTCGATCATTCCGGGAGCCATCGCTTATTACTTGTCGGGATTGCAGAGTACCTTTGACCACTTTGTCTATTTTGTACTCGTGCTATTTTCATGCATGATGCTCGTCGAGGGCCTGATGATGATAGTTGCAAGCATTGTGCCTGACTTTCTGATGGGCATCATCACGGGTGCCGGAATCCAGGGGATGATGATGCTAACGGAGGCTTTTTCAGGCTTCCGAACGACTTGCCGAGGCCTGTCTGACGGTACCCGATGTATTATATTGCCTTCCACAAATACGCCAACCAAGGATTCTACAAGAACGAGTTTATAGGGCTAACATTTCCCAACAATCAAGCGGTAGGGCATCCAACAATCACCGGGGATGAGATATTGAAGGATATATGGCAAGTTGAAGCGGGGTACTCAAAGTGGGTGGATTTGGGAATATTGCTCGGAATGGTGCTCTTGTACAGGTTTCTTTTTTTCATGATTGTGAAACTATGAGAGAGGGCAGGGCCTAAGTTAAATGAATTTAGGAATAGAGCTCCATAAGCATCCCTTTTCTTTTGTTGCCAACTAAGGAAATATAACCCTTTGTCTTGTTCCTCAAATTCGAGATAGCTCTTTTGAACTTTGACAATTATATGTGCTTTACAAATGGCATTCATGACCTATAAAGATGCTTTTATAATATTCTCTTCAACAGATCATGCAACACTCCTATTTATTTGCTTACAATG

Network for GWHGAAEX017541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	97	241	2.20E-23
PF01061.23	ABC2_membrane	393	565	1.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.540
	SRR5643514	five period of Gastrodia elata	2.060
	SRR5643515	five period of Gastrodia elata	0.500
	SRR5643524	five period of Gastrodia elata	1.230
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.080
	SRR5643659	five period of Gastrodia elata	0.030
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.250
SRP279888	Gastro	Gastrodia elata tuber	0.01
	Juven	Juvenile tuber	0.03
	Mother_Gastro	Mother tuber of Gastrodia elata	0.38
	Mother_Juven	Mother tuber of Juvenile	0.25