Detail information of GWHGAAEX017551/evm.TU.scaffold_82.64


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30572.00E-48Cytochrome c oxidase, subunit VIb/COX12
nrgi|672117951|ref|XP_008782171.1|1.13E-63PREDICTED: cytochrome c oxidase subunit 6b-1-like [Phoenix dactylifera]
Swissprottr|Q9S7L9|CX6B1_ARATH6.00E-49Cytochrome c oxidase subunit 6b-1
trEMBLtr|M0TRB6|M0TRB6_MUSAM2.00E-54Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P17630_001}
TAIRAT1G224502.00E-48cytochrome C oxidase 6B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007832256813248849+
Transcript Sequence

Network for GWHGAAEX017551

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02297.16COX6B1622216.40E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02267COX6B Metabolic pathways map01100
Oxidative phosphorylationmap00190
Cardiac muscle contractionmap04260
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0005739Cellular Componentmitochondrion

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms110.710
SRR2545915Juvenile tuber160.130
SRP108465SRR5643513five period of Gastrodia elata71.650
SRR5643514five period of Gastrodia elata123.680
SRR5643515five period of Gastrodia elata77.820
SRR5643524five period of Gastrodia elata126.610
SRR5643525five period of Gastrodia elata60.320
SRR5643528five period of Gastrodia elata74.910
SRR5643658five period of Gastrodia elata38.550
SRR5643659five period of Gastrodia elata43.950
SRR5643660five period of Gastrodia elata40.530
SRR5643661five period of Gastrodia elata44.340
SRR5643662five period of Gastrodia elata42.990
SRR5643663five period of Gastrodia elata44.980
SRR5643664five period of Gastrodia elata37.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_157.670
SRR6049655Rhizomagastrodiae_C368-T10_good_1151.080
SRR6049656Rhizomagastrodiae_C368-T07_good_176.190
SRR6049657Rhizomagastrodiae_C368-T07_good_141.540
SRR6049658Rhizomagastrodiae_C368-T04_good_147.050
SRR6049659Rhizomagastrodiae_C368-T04_good_137.290
SRR6049660Rhizomagastrodiae_C368-T01_good_141.020
SRR6049661Rhizomagastrodiae_C368-T04_good_144.730
SRR6049662Rhizomagastrodiae_C368-T01_good_1104.220
SRR6049663Rhizomagastrodiae_C368-T01_good_187.770
SRR6049664Rhizomagastrodiae_C368-T10_good_1141.930
SRR6049665Rhizomagastrodiae_C368-T10_good_1141.930
SRP279888GastroGastrodia elata tuber 37.28
JuvenJuvenile tuber35.15
Mother_GastroMother tuber of Gastrodia elata 35.93
Mother_JuvenMother tuber of Juvenile 42.11