Detail information of GWHGAAEX017553/evm.TU.scaffold_82.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|55980275|ref|YP_143572.1| | 3.00E-121 | queuine tRNA-ribosyltransferase [Thermus thermophilus HB8] |
| KOG | KOG3908 | 1.00E-158 | Queuine-tRNA ribosyltransferase |
| nr | gi|695043204|ref|XP_009409286.1| | 0 | PREDICTED: queuine tRNA-ribosyltransferase-like [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0RL64|M0RL64_MUSAM | 0 | Queuine tRNA-ribosyltransferase {ECO:0000256|RuleBase:RU003777} |
| TAIR | HS13654276 | 1.00E-158 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000078 | 3296858 | 3330768 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017553
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01702.17 | TGT | 128 | 360 | 1.30E-86 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0101030 | Biological Process | tRNA-guanine transglycosylation |
| GO:0006400 | Biological Process | tRNA modification |
| GO:0008479 | Molecular Function | queuine tRNA-ribosyltransferase activity |
| GO:0016763 | Molecular Function | transferase activity, transferring pentosyl groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.510 |
| SRR2545915 | Juvenile tuber | 6.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.690 |
| SRR5643514 | five period of Gastrodia elata | 15.690 | |
| SRR5643515 | five period of Gastrodia elata | 12.950 | |
| SRR5643524 | five period of Gastrodia elata | 14.680 | |
| SRR5643525 | five period of Gastrodia elata | 14.180 | |
| SRR5643528 | five period of Gastrodia elata | 16.040 | |
| SRR5643658 | five period of Gastrodia elata | 12.000 | |
| SRR5643659 | five period of Gastrodia elata | 11.690 | |
| SRR5643660 | five period of Gastrodia elata | 12.410 | |
| SRR5643661 | five period of Gastrodia elata | 11.780 | |
| SRR5643662 | five period of Gastrodia elata | 9.320 | |
| SRR5643663 | five period of Gastrodia elata | 11.960 | |
| SRR5643664 | five period of Gastrodia elata | 8.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.36 |
| Juven | Juvenile tuber | 16.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.23 | |
| Mother_Juven | Mother tuber of Juvenile | 25.05 |