Gene detail

Detail information of GWHGAAEX017554/evm.TU.scaffold_82.67

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|427713171\|ref\|YP_007061795.1\|	glycogen debranching protein GlgX [Synechococcus sp. PCC 6312]
KOG	KOG0470	1,4-alpha-glucan branching enzyme/starch branching enzyme II
nr	gi\|672135912\|ref\|XP_008791635.1\|	PREDICTED: isoamylase 3, chloroplastic isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9M0S5\|ISOA3_ARATH	Isoamylase 3, chloroplastic (Precursor)
trEMBL	tr\|M0U0F6\|M0U0F6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P14980_001}
TAIR	AT4G09020	isoamylase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000078	3381072	3466233	+

Transcript Sequence
>GWHTAAEX017554 ATTCTTAAAGATTGAGAAAATCAATAGCACACTACCTAGTAAGCTCTGCACAGCCATGCATAAAAGATATAATAATCGCAGGAGTGTCTAAACCCAACTACTGAAGCTCCTCCATTCGCTTAGAAGCCGCAGACGCCAAACAACTCGCCGATTGCTGCTTTGAGGTGCATTCAGAGAACAACTTGCAATTCGAGATGGAGGTCCACTGCGCCCGTAGTATAACCTGCGCTGTCTCTTGTAGCCAGCTCGCCGAAATTTCCTTCCCGTTCAAAAACTACACAAGGCTCGACTCTGCTCTTCAGTTACCTCGTTTCTTCTCTGGCCTATCCACGACGAGGACGCCGCGCAGGCAGCTGTCTTCAGCGTCTCTTCCTTCTAGCCGGGCCAAAGTGCCGTTGGATCGAGTTATGCTAAGCAAACTTTTCAACCATTATGCTATCCAAGTGTATAACCGAGGTATAGAAGGGAGTGTTTTAGAGGAAAAGGATTCTCAGATGTCAGGGATCGATCTCGCATTGAAATGTTCCCTTGGTAAGGCATATCCACTCGGAGCATCAGCAGTTGACGGTGGAATCAATTTTGCAATCTTCTCTCAGCATGCTTCTTCAGTCATTCTTTGCCTATCCATTTCAGAGAGGAGTGGTTCTGAAAAATTGAGCGAAAGCATGATTGAAGTCCCATTAGATCCTCAAAAGAATAAAACTGGAGACATATGGCATATCTGTGTTGAGGGTTTACCTGACTTTGGCGTCCTTTATGGATATAAAATGGATGGACCTCGAGAATGGGCTTGCGGTCATCGATTTGACAACAATGCCATACTTTTAGATCCTTATGCAAAGTTAGTTTCAGGTCGCAAAATTTTTGGGGATGTTAAACAAAGAATGCATAAGTTCCTTGGTACTTACGATTTCTGTAGTTCATCATTTGATTGGGGGACTAATTACAAACTTCCAGTTATACCTGAGACAGATCTCGTCATATATGAAATGAATGTTCGCGCATTTACAATGGATGAGTCAAGTGGGCTAGATCCTAAAATTCGTGGCAGTTATCTGGGTGCTATCAGCAAGATCCCACATTTATTGGAGCTCGGTGTGAATGCTGTAGAATTACTACCAGTTTTTGAGTTTGATGAGCTGGAATTTCAGAGGCGCCAAAATCCTAGAGATCACATGATCAATACATGGGGATATTCCACGGTCAATTTTTTTGCGCCCATGAGCAGATATGCTAGCATGGGCGCTGGATCTTTGGCAGCTTCTCAAGAGTTCAAAGAAATGGTCAAAGCTTTTCATAGTGCCGGAATTGAGGTCATTTTGGATGTAGTTTTCAACCATACTAATGAAACTGATGATAAGCACCCATATACAACTTCATTTCGTGGTATTGATAATAAGGTTTACTACATGATGGATCTTCAAAATAATGCCCGTCTGCATAATTATTCTGGTTGCGGAAACACTCTTAACTGCAACCATCCTGTGGTCATGAAGCTTATACTGGACAGCTTGAGGCATTGGGTTGAAGAATATCATGTGAATGGATTCCGCTTCGATCTTGCAAGTGTTCTTTGTAGAGACTTTGATGGCACTGCACTTGATGCACCTCCACTTATTAAGGAAATTGCAAAGGATCCTGTCTTGTCCCGATGTAAAATAATTGCTGAGCCATGGGATTGCGGTGGCCTGTATTTAGTAGGAAGGTTTCCAAATTGGGATAGGTGGGCGGAATGGAACGGCAAATATCGTGATGATGTTCGTCGATTTCTTAAGGGTGACAATGGTATGAAGGGATCTTTTGCAACTCGTGTGTCTGGATCAGCAGACTTGTATCAGATAAACCACCGTAAACCTTACCATAGCATCAACTTTGTGGTCGCTCACGATGGTTTCACACTGTATGATCTTGTTTCATACAATATAAAGCACAATGATGCTAATGGAGAAGGGGGGAATGATGGGTGCAATGATAATTTTAGTTGGAACTGCGGATTTGAAGGTGAAACAGATGATATTATCATAAAAAATTTGCGAGCACGACAAATGAAAAACTTTCATGTTGCATTAATGATCTCTCAGGGAACGCCAATGATGCTGATGGGAGATGAATATGAGCATACTAGACATGGGAATAATAATAGCTATGGACATGATACTTCCATCAACCATTTCCAATGGGGAGAGTTAGAGGCAAAAAGAGGCACTCATTTTAGATTTTTCTCAGAAATGATAAGGTTCAGAAAAGCGCATCCTATTTTGAGGCGTGATCGATTTCTTGAAAAGGATGACGTTACCTGGCATGAGGACAACTGGAATAATCTGGAAAGCAGATTCCTAGCATTCACACTCCATGATAAATCTGATGGAGATATCTATATTGCCTTCAACACGCATGACTACTTTGTTAAAACTTCGGTTCCTTCACCGCCAAATGGAAAGCTCTGGCATAGAGTGGTAGATACAAATCTTGAATCCCCTAAAGATATTGTTGTTGAAGGTGTGCTATTCAAGGGATCAGTATATAATATGGCCCCCTATTCTTCAATTATTCTGAAGGCAAAGCCATGAGATATGTGGTACTGTTTTTGTTTGCAAAAAATCGCAGTTACAATTTGTGAACTTTAAAAATGTTTATGTTATGCCTTTTTCTTATTTTCTTCGAATAATGAAAAAAAATCTCTTTAGGGTTTCTCTTTTTGGAAAGGTAAATGTTTTAAAGTGCCTCACTACGTGAATCTCAGTGGTGGAGCTCGAGTTTGAACTCTTAATCGGTCAATAGTTCAAATCTCAAAAGTCACGTATTTGTCTTACAAGTTTCAACTTCTTTTAAAAGAAAAAGCCTCACTATTTTCAAAGCATATTTGATGATGGGAGGATGGTCATTCATTTATTGTGATTCTTAAGAAGATACCACACCAAATTATTAACTATTACATGCAGCCCTCAAAATTTTATGTGATACAGCTAATTTTTGTGCTTATCTTTTTGTGCAACACTATATAGAGTTATTGCCTAGCTCATTGTTGAGTGTATTTCTTTTTTTCTATTCGATTTCATTCTTCTAGTGCAGTAACCTTTATAAAAGGC

Network for GWHGAAEX017554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02922.17	CBM_48	117	215	4.00E-12
PF00128.23	Alpha-amylase	287	642	2.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	pathway	mapID
K01214	ISA, treX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0003824	Molecular Function	catalytic activity
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.710
SRP064423	SRR2545915	Juvenile tuber	65.380
SRP108465	SRR5643513	five period of Gastrodia elata	36.540
	SRR5643514	five period of Gastrodia elata	39.930
	SRR5643515	five period of Gastrodia elata	32.260
	SRR5643524	five period of Gastrodia elata	34.080
	SRR5643525	five period of Gastrodia elata	18.360
	SRR5643528	five period of Gastrodia elata	16.830
	SRR5643658	five period of Gastrodia elata	16.890
	SRR5643659	five period of Gastrodia elata	43.780
	SRR5643660	five period of Gastrodia elata	46.590
	SRR5643661	five period of Gastrodia elata	43.330
	SRR5643662	five period of Gastrodia elata	58.590
	SRR5643663	five period of Gastrodia elata	43.600
	SRR5643664	five period of Gastrodia elata	47.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.880
SRP279888	Gastro	Gastrodia elata tuber	69.94
	Juven	Juvenile tuber	43.19
	Mother_Gastro	Mother tuber of Gastrodia elata	15.07
	Mother_Juven	Mother tuber of Juvenile	23.98