Detail information of GWHGAAEX017558/evm.TU.scaffold_82.87


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08006.00E-68FOG: Predicted E3 ubiquitin ligase
nrgi|743849796|ref|XP_010939707.1|7.96E-96PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase ATL6-like [Elaeis guineensis]
Swissprottr|Q8LGA5|ATL31_ARATH2.00E-68E3 ubiquitin-protein ligase ATL31 (Precursor)
trEMBLtr|J3MYB6|J3MYB6_ORYBR2.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:OB09G19950.1}
TAIRAT5G274206.00E-68carbon/nitrogen insensitive 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007844370574438145+
Transcript Sequence

Network for GWHGAAEX017558

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21271701.60E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms58.820
SRR2545915Juvenile tuber44.160
SRP108465SRR5643513five period of Gastrodia elata119.670
SRR5643514five period of Gastrodia elata66.190
SRR5643515five period of Gastrodia elata244.320
SRR5643524five period of Gastrodia elata71.520
SRR5643525five period of Gastrodia elata187.550
SRR5643528five period of Gastrodia elata480.440
SRR5643658five period of Gastrodia elata132.560
SRR5643659five period of Gastrodia elata186.590
SRR5643660five period of Gastrodia elata76.260
SRR5643661five period of Gastrodia elata106.830
SRR5643662five period of Gastrodia elata230.030
SRR5643663five period of Gastrodia elata131.840
SRR5643664five period of Gastrodia elata508.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1270.750
SRR6049655Rhizomagastrodiae_C368-T10_good_1104.490
SRR6049656Rhizomagastrodiae_C368-T07_good_1145.560
SRR6049657Rhizomagastrodiae_C368-T07_good_1217.770
SRR6049658Rhizomagastrodiae_C368-T04_good_1328.600
SRR6049659Rhizomagastrodiae_C368-T04_good_1454.360
SRR6049660Rhizomagastrodiae_C368-T01_good_1357.280
SRR6049661Rhizomagastrodiae_C368-T04_good_1331.670
SRR6049662Rhizomagastrodiae_C368-T01_good_1117.640
SRR6049663Rhizomagastrodiae_C368-T01_good_1198.180
SRR6049664Rhizomagastrodiae_C368-T10_good_1185.540
SRR6049665Rhizomagastrodiae_C368-T10_good_1185.540
SRP279888GastroGastrodia elata tuber 59.56
JuvenJuvenile tuber32.35
Mother_GastroMother tuber of Gastrodia elata 539.82
Mother_JuvenMother tuber of Juvenile 489.63