Gene detail

Detail information of GWHGAAEX017559/evm.TU.scaffold_82.88

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|530780331\|ref\|YP_008432137.1\|	1.00E-100	Minichromosome maintenance protein MCM [Thermofilum sp. 1910b]
KOG	KOG0480	0	DNA replication licensing factor, MCM6 component
nr	gi\|657942105\|gb\|AID55114.1\|	0	DNA replication licensing factor [Cocos nucifera]
Swissprot	tr\|Q9SF37\|MCM8_ARATH	0	Probable DNA helicase MCM8
trEMBL	tr\|A0A068EUV7\|A0A068EUV7_COCNU	0	DNA replication licensing factor {ECO:0000313\|EMBL:AID55114.1}
TAIR	AT3G09660	0	minichromosome maintenance 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000078	4440346	4511392	-

Transcript Sequence
>GWHTAAEX017559 ATGTTCGTAGAAAAGGAACGCGCGCTGGAGCGCAGGGATTTCACAGAATCCGCGGCAAATATCTGGCCGTGCTATTTCCCGGAGGCGGAATTTTCCATAGAGGATAGAAAATATAAACTTATGGCAGAACTCGAAAATTTCTTCTCATCTCCTCAAGCAGCTACCATGCTTTCCAACGTTAAGTATGATAGTTATGTGTTTATACCAATTGACTTCCAACATCTTCGTAAATCATGTTGGGTGGAAGGATTTTATGCAGATCTGAAGGTAGTGCCGAGTGACGCACTCTCATGCATGGGAGCTGCAGCTCATATGGTTTTGTTGTTGAAGGGAAAGGGTCACCTTATTGCTGATGCAGCTAAGGTTAATGTTAGACTGTATAATCTTCCCGATTCGTTGATCACTCTAAAGAGTTTAAAAGCTGCTTCCATTGGCAAACTTGTTTCTGTACGTGGCACCGTTGTCAAACTCAGCACTGTTAGGCCTCTTGTCTTGCAAATGGATTTTGCATGTGCTAAGTGTGGAATTACTATTACTAGGGCATTCCTTGATGGAAAATTTTCACCACCAATGGGTTGTAGTATTCATGGTTGTCGAAGCAGAACTTTTATTCCTGTTAGATCTACTGCAAAAGCTATAGATTTTCAAAAAATAAGGCTTCAGGAAATACTTAAATCTGGAATTTATGAGGAGGGAAGGGTGCCTCGTACAGTGGAATGTGAATTGAGTGCAGATCTTGTTGATTGTTGCATACCTGGTGATGACGTGACAGTTACTGGAATCATTAAAGTAATTAATAATTACATGGATGTAGGCGGAGGGAAGTCAAAAACCAGGAATCAGGGCCTTTATTATCTGTATTTGGAGGCAGTTTCAGTTAAAAATGCAAAATCACATTCTGCTTCTGAAGATTATCAACTTGCTAATTCTGAGAGCAAGAGTAACATGCTATGTGAATTGCATACATTTTCACAGAGGGATTTGGAGTTTATTGCCAAATTTTTAGATGAGTGTGGGCCTGATGCATTTCGTCAAATTGTTCAATCCTTTTGTCCTTCCATTTATGGGCATGAATTTGTTAAAGCTGGAATCACACTTACATTGTTCGGAGGGGTTCAGAAGTACTCAACGGATGAGAACAAGGTCCCGGTTCGAGGGGACATTCATGCCATTATTGTTGGTGATCCTGGATTAGGAAAAAGCCAACTTCTACAAGCAGCTGCAGCAGTTTCGCCAAGGGGCATATATGTTTGTGGCAATGCAACAACAAATGCTGGATTAACTGTTAGTGTTGTCAAGGATCATATGACAAGTGATTATGCCTTTGAGGCTGGAGCTATGGTTCTTGCTGATCGTGGTTTATGTTGTATTGATGAGTTTGATAAATTATCTGCAGAGTATCAGTCTCTTCTAGAAGCAATGGAACAACAGTGTGTCTCGGTTGCAAAAGCTGGATTAGTAGCAAGTCTATCTGCACGTACGTCTGTTTTAGCAGCTGCAAATCCTGTTGGCGGCCATTATAACCGTGCTAAAACTGTGAATGAGAACCTGAAAATGAGCGCTGCTCTTCTGTCACGATTTGACTTGGTGTTTATTTTACTAGATAAGCCAGATGAAGTACTTGATAAGCGAGTTTCTGACCATATCATGGCACTTCATTCGGGAAACGGGGAGCATTTACTACCTGCTAGGAAATTAAGTAGAGTGCTAGAATCTTGCGGGGACATTGCATTCGGTATTGAATGTGGATCCCTTATTTCTCGTCTTAGACTCAATCGTGAGAAAGATAAGGATTTTGTTCCAATACCTACCCCTCTTCTCCGCAAATACATAGCTTATGCAAGGACATATGTATTTCCCAGGATGTCAAAGCCAGCTGCAGAGATTTTACAGAAATTTTACCTGCAATTGAGAGACCATAACACCTCAGCTGATGGCACCCCTATCACTGCAAGGCAGTTGGAAAGTTTAGTAAGACTTGTGGAAGCTCGTGCACGGTTAGACTTGAGAGATGAAATAACCGCCCAAGATGCTATGGATGTGGTTGAGATAATGAAGGAATCATTGTATGACAAATTTGTGGATGAGCACGGCTTTGTGGACTTTGCTAGGAGCGGTGGGATGAGCAAGCAGAAGGAAGCAAAGAGATTCTTGAGTGCCCTCAACAAGCAGTCGGAGCTGCTACGAAAGGACTGCTTTTCAATTTCGGAAATATACAGTTTGGCTGATGGGATTAGTTTGAGAGTTCCTGACATAGACACTTTTGTAGATAACCTGAACAGCGCTGGCTTTCTTCTTAAGAAAGGACCCAAAATCTATCAGTATTACACCATAAGGGATGCCAAGACTAGGAATGCTCTGCTTCAGGGACAACTCCGGAATGGTCTATATGAGCTTTTTTTCCAACATTCCTACATTTTTTAGCAGCAGAATAATCTCCAGCAAGTGGCACGCAAAACTAAGCCATCATTCCTTGACATAATCCAAATAACACAAGATTTGAGAAAACTGTAGTTGTTCTTGAAGGAATTGATTGTAGTGGTTGTTACAGGAAAATATAAGTGTCGTGTGTGCTTCTTTTTATGAAATGTAATATTTTTTTTGACGGAAGAGATATTTTTTATTATCCTTTTTTATTTATTTCATTTTTGATGAGAGACACTTTTTAGTCATCCTATTATATTCATTCATAAGATTG

Network for GWHGAAEX017559

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17207.2	MCM_OB	136	265	2.20E-26
PF00493.22	MCM	340	689	1.30E-121

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006270	Biological Process	DNA replication initiation
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.730
SRP064423	SRR2545915	Juvenile tuber	4.480
SRP108465	SRR5643513	five period of Gastrodia elata	2.180
	SRR5643514	five period of Gastrodia elata	2.300
	SRR5643515	five period of Gastrodia elata	1.950
	SRR5643524	five period of Gastrodia elata	1.690
	SRR5643525	five period of Gastrodia elata	2.050
	SRR5643528	five period of Gastrodia elata	0.970
	SRR5643658	five period of Gastrodia elata	1.220
	SRR5643659	five period of Gastrodia elata	2.180
	SRR5643660	five period of Gastrodia elata	2.070
	SRR5643661	five period of Gastrodia elata	1.980
	SRR5643662	five period of Gastrodia elata	1.830
	SRR5643663	five period of Gastrodia elata	3.240
	SRR5643664	five period of Gastrodia elata	1.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.420
SRP279888	Gastro	Gastrodia elata tuber	4.74
	Juven	Juvenile tuber	4.22
	Mother_Gastro	Mother tuber of Gastrodia elata	3.07
	Mother_Juven	Mother tuber of Juvenile	3.22