Detail information of GWHGAAEX017562/evm.TU.scaffold_828.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29051.00E-20Transcription initiation factor IIF, small subunit (RAP30)
nrgi|743893233|ref|XP_010911745.1|9.45E-32PREDICTED: transcription initiation factor IIF subunit beta-like [Elaeis guineensis]
trEMBLtr|M0RNB0|M0RNB0_MUSAM1.00E-29Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00790_001}
TAIRAT1G755101.00E-20Transcription initiation factor IIF, beta subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000008221083611534+
Transcript Sequence

Network for GWHGAAEX017562

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03139TFIIF2, GTF2F2, TFG2 Basal transcription factors map03022

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms53.350
SRR2545915Juvenile tuber62.200
SRP108465SRR5643513five period of Gastrodia elata18.820
SRR5643514five period of Gastrodia elata20.770
SRR5643515five period of Gastrodia elata18.880
SRR5643524five period of Gastrodia elata18.070
SRR5643525five period of Gastrodia elata29.100
SRR5643528five period of Gastrodia elata26.810
SRR5643658five period of Gastrodia elata26.880
SRR5643659five period of Gastrodia elata20.150
SRR5643660five period of Gastrodia elata23.480
SRR5643661five period of Gastrodia elata24.760
SRR5643662five period of Gastrodia elata25.100
SRR5643663five period of Gastrodia elata21.450
SRR5643664five period of Gastrodia elata24.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.080
SRR6049655Rhizomagastrodiae_C368-T10_good_128.320
SRR6049656Rhizomagastrodiae_C368-T07_good_119.910
SRR6049657Rhizomagastrodiae_C368-T07_good_127.960
SRR6049658Rhizomagastrodiae_C368-T04_good_118.780
SRR6049659Rhizomagastrodiae_C368-T04_good_119.480
SRR6049660Rhizomagastrodiae_C368-T01_good_114.700
SRR6049661Rhizomagastrodiae_C368-T04_good_117.130
SRR6049662Rhizomagastrodiae_C368-T01_good_115.930
SRR6049663Rhizomagastrodiae_C368-T01_good_114.710
SRR6049664Rhizomagastrodiae_C368-T10_good_121.960
SRR6049665Rhizomagastrodiae_C368-T10_good_121.960
SRP279888GastroGastrodia elata tuber 28.87
JuvenJuvenile tuber37.87
Mother_GastroMother tuber of Gastrodia elata 29.39
Mother_JuvenMother tuber of Juvenile 34.84