Gene detail

Detail information of GWHGAAEX017564/evm.TU.scaffold_83.5

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0954	4.00E-111	PHD finger protein
nr	gi\|672194886\|ref\|XP_008776404.1\|	0	PREDICTED: uncharacterized protein LOC103696526 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9C5X4\|ATX1_ARATH	1.00E-22	Histone-lysine N-methyltransferase ATX1
trEMBL	tr\|M0TSX4\|M0TSX4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P23210_001}
TAIR	AT1G77800	4.00E-111	PHD finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000079	252238	295392	+

Transcript Sequence
>GWHTAAEX017564 ATGACAGGCTGCCGATACAAACGGCGGAAGATGACGGTAGGTTCCGCCGCCGACAGATCTGGTCTTTCCACGCCTTCGATCGAAGGTCTGTGTGTGGCCTCCCGTCCGATGGCCCCTGGGCTGGATCTTTACACTCAGGCAATAAAAGTCCTTACAGTGAGCTGCCCGTTTGATTCCGGCGAGGTGATTCCTAGGCTGGGAACACTGCCTTCTGTCCTGGCCGCTAGCTTGCATAAGTCCGATGGACGCAGGAAGCACCGCAAGTTTCGAGAAGATGCTGCTGGAAAAGCCGTCCGGCCTGGACGGCCGCCGTCGACGTTCAGTATGTGGGAAAGGACTGAAGCGTACTTTAGGCCCATAACTGTGGACGACATCGACCTCTTGGTTACTCGATTGGCTCCAAATAATTGTTTCTACATTCCTAGCTCAGGAAATGTTGTTGAAAATGTTAGGAGTGATGAAGCAATTCCCCATGAGCGTCCACTGGTTGATGTAAATGTGGGCACCAGCTCAGTTGCAGGTAAAGAAGAGTCGGAGTGTGCTCAAGTGGAGCCGTCGCAGGACTTGAAATTCGATGGCGAGGTGACTTGTACTACCGCATTGCCCTTGGAAGAACCTGAGTTGGAGGAAAAACAATCACTGAATTGGATTTTGGGGTGTAAGCAGAGATACCTTCTCACTTCAGGAAGACTTTTAAAGAAAAAGATCCTCTTTGGTGAGGATGCAGGCTTAGAACAGCTTTTGGTACTTCCTCGTATGGAAGCAGCAGGAGCTGCTTCTCCATGTTGTGACTTTTGTTGCTCGGGAAGAAGTGACGTGAAGTCTAACCGTCTTCTTTTATGTGATTCTTGCAAAGTCTCAGTTCACCAGAAATGTTATGGCGTTCATGAGGTTCCTGCAAAGGGTTGGTTGTGCTCGTGGTGTAAATATCTAGAGTCAGCTGGAAGGAAGAATCTGAGAAATTATGATGATGAGAATTCTACTTCTAGACCCTGTATGCTTTGCCCAAAAACCAGTGGAGCGCTGAAACCTTTGGCTAAGACTTTGGAAGGAAGCGAAGAGACAAAATTTGTTCACTTGTTTTGCTGTTTGTGGACACCTGGGATGTATGTAGAGAATGCAGGGAACATGGGACCTATTTCGAACTTTGAAAACTTGCCGGAGACTCGAAGGAGACTAGTTTGCAACTTGTGCAAGGTGAAGCATGGCACTAGTGTGCGTTGTAGCCATGGGTCATGCCGTGCATCTCTCCATCCTGTTTGTGCCAGGGCTGCTAAACATCAAATGGAGATATGGGGAAAGTTTGGTGTTGATAATGTAGAGCTGCGAGTTTTCTGTTCAAAGCACTCTCCTGTTCAAAAAATTGAAAGCGTTTCAAAAGAAGAACAGGCTACCACAATCGGCGATCTTGATATGGTTGAAAAACTTTTGCCTGAAAATGTAATTAAAAAGTTACCCAAAATAAGGATTACCCATAAGGGTAAAGATAATAGTGTGCGAGATGGAAAAGTTAGTTCTATTTTTGATGGTGGTATGAAAAATGATTCAAACCTTGATAATGAAAATTTGGTGATTCAGTGTAGTTCTGAAAGTGGAGATGCAGCAGAGTCAATTAAAATGGAAAGAGCTCTAGCTCTTGATAATGTCAATGTTCTTCAAAGCACATCTGATTTCAGTTCAATTTTCAGGAAGATTATTGATCGTAGGAAAATCAGTATTGCTGATGTTGCTTTAGAGCTTGGTGTGTCATACGCTTCCTTGGAATCATCAGTGATGGAAGAAGGCAGAACTATTCCTTCTGAATTGAAATTAAAAATTATTCAATGGCTTCAAAATTTTGTGTATGTGCAACCGTCTACATGCCATTCAAAAAGTAGAAATGCTTCTATTATATTATCAAATTGTAAAAAGTCTAGTTTTGATGATTCAAGTACTTGTTTACTTGACCCAAATGGACAAGATATAGTCAGGTATCCAGAACTTGCTGCTCCTCTGTTTGCCAAGCCACCATCAGTGAGTTCAAGAATGAATAGTGAAGATGATTTAATAGATTATAATGCATTGACATCGTCTGTTGAAGCATTACTTCAAAGAAATACTAAGCAGAAATGTGCTGCTCTTGGTGGTGGTTTACCTAGCGACTGCATTAACGTTGCGACAAGTGTTCTTGACGGTGTGAGCTTTTGCAATATTGACAACGAGCATCATAAAGAACTTGACAATGCAGAGACGAGCTTGGGAGACCATACATGTTTTGTAAACTCAAATGATTCTAAGGAGCAATTTTATGAAGATGAAGATATGCCACAAGGAGGCTACATTAAAGCAATATCTGATTATTCACATCTAAATGTGGAAGACAATCAAAAATCTGAGGCCAACATTTCAGAGCTAAAGACCGACAACTTAGAGCGTTCAAACTATGCTACTAATTTGGGTGTTCACCGTAATAATGAAGACATTGGACCATGCTCTATGCCGTATATTCATCCATTCATCCTGAAAAAATTGTGTGAATATCAAAATCAGTGGTCTTTACTCCATAAACAAAGAAACATTAAAACTGGCTGTAATGGCAAGTTGAGCACCACTAATACTGAGACGGGTTGTCTGTCTGATGCTACAAAGTTGGATCAATTGTCAAAACTTAAAAATATGCGGGCCATGATTTTTTCACCTACAGATGAAATTGAAGGAGAGTTGCTGTACTTGCAGAATTGTTTACTTGATAGGGTGAATTCAATCAAACATTCATGTGAAGAATTGATTCATAGGATGATCACCCATCTACCTCAAGAGATAGATGCATTTAGGAAGAAAAGCTGGGATATGGTGCTTGTCAATGAACATCTTCGTGAAGTCAAAGAAGCAAAGAAAAGAGGGAGGAAAGAGAGGCGGCATAAAGAAGCTCAAGAAATACTTGCTGCAGCAACTGCTGCTGCTGCTTCTTCTAGGAATTCAATGCTACGTAAAGATACAGTTGATGGAATAAGCTTGACTCAGCAGAATCCTCTTAAAATTAGTACTATAACTAGAAGACCAAAGGAAACTATTTCAAGGTCATCTGTTGCTAAAGTTTCATCAGACAAATGTTCTAGTGACTTTAAGTTTCCAAATCTTGCCATGGAAAATGCACTGTTCTGTGATGTCTGTTGGAGAACTGAGACATTAGTCAACCGCATTTTTGTTTGTTCTAACTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTCGTCTTAAGGATCCCACCGGTCCCTGGAGATGTGAGCTTTGTGAGGATGCATCCTTACAGTCAAGTCCTAAGAATAAACAATTAAATAGTGGTGAAAATACTTCTTATAGGTCCCAATGTAGTTTATGCAATGGTGTAACTGGTGCTTTTCGCAAAACTACTGATGGAGAATGGGTTCATGCCTTCTGTGCTGAGTGGTTGCTGGAATCAACATACAAAAGGGGTCAGCAAACTGTTGTTGGGGGAATGGATGCTATTCCTAAGGAAAAGGACGCAAATGCTTGCTGTATATGCCATTACAGACTTGGTTTGTGCCTTAAGTGTAGCTATGGACACTGCCAAGCTAAATTTCACCCAACCTGTGCTAGAAGTGCTGGTTTTTTCATGAATATAAAAGCTATCGGTGGCAGGTTCCAGCACAAGGCTTATTGTGAAAAGCATAGTGTGGAGCAGAGAGAAAAGGTTGATAATCAGCATGGTGCCGAGGAGCTTAAGAATGTAAAGCTAGTGAGGGTTGACCTTGAGAAAGTACGCCTTCTTTGTGAGAGAATCATTAGAAGGGAGAAACTGAAGAGGGATTTGGTTGTTTGCTCACATGGGATTCTTGCGTCGAGGAGAGACTGCGTAGCCTTCTCGGCCATGGTTCGCAGCTCTTTCACCCCTGGCATCAGCTCTGAATCTGCAACTACCTCCATAGACAATCCGTCTTACAGCGAAGCATTTCAAAGGTGCGATGACTTCACGACGGTGGACAGCGCCGCCATCATCCATAGGCGGAGGAGCTCCTGCAGACCTCCGATAGATGTTGACAGGAAGACCGACGACAGCTCCACTTCTCAGCTTCTTGACAAAAGGAAACTTGCCGACCGGGCAGTCTTCTCTGGCAAACATCTTCCTCAAAGGCCAGCGGATCACAAGGGAGTAAAAACTGTTCTCCAAAAGGAAAGGGCGATGATGGCTCGCTACCAAGCTTCCTTGCAGAAGGAGGATAGTTCAGCTGCGTGTGATTCTGAGTCATGCTGA

Network for GWHGAAEX017564

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13831.5	PHD_2	276	308	2.50E-10
PF13832.5	zf-HC5HC2H_2	331	449	1.10E-20
PF13831.5	PHD_2	1059	1092	2.90E-09
PF13832.5	zf-HC5HC2H_2	1116	1224	4.30E-26

Protein Sequence

>GWHPAAEX017564
MTGCRYKRRKMTVGSAADRSGLSTPSIEGLCVASRPMAPGLDLYTQAIKVLTVSCPFDSGEVIPRLGTLPSVLAASLHKSDGRRKHRKFREDAAGKAVRPGRPPSTFSMWERTEAYFRPITVDDIDLLVTRLAPNNCFYIPSSGNVVENVRSDEAIPHERPLVDVNVGTSSVAGKEESECAQVEPSQDLKFDGEVTCTTALPLEEPELEEKQSLNWILGCKQRYLLTSGRLLKKKILFGEDAGLEQLLVLPRMEAAGAASPCCDFCCSGRSDVKSNRLLLCDSCKVSVHQKCYGVHEVPAKGWLCSWCKYLESAGRKNLRNYDDENSTSRPCMLCPKTSGALKPLAKTLEGSEETKFVHLFCCLWTPGMYVENAGNMGPISNFENLPETRRRLVCNLCKVKHGTSVRCSHGSCRASLHPVCARAAKHQMEIWGKFGVDNVELRVFCSKHSPVQKIESVSKEEQATTIGDLDMVEKLLPENVIKKLPKIRITHKGKDNSVRDGKVSSIFDGGMKNDSNLDNENLVIQCSSESGDAAESIKMERALALDNVNVLQSTSDFSSIFRKIIDRRKISIADVALELGVSYASLESSVMEEGRTIPSELKLKIIQWLQNFVYVQPSTCHSKSRNASIILSNCKKSSFDDSSTCLLDPNGQDIVRYPELAAPLFAKPPSVSSRMNSEDDLIDYNALTSSVEALLQRNTKQKCAALGGGLPSDCINVATSVLDGVSFCNIDNEHHKELDNAETSLGDHTCFVNSNDSKEQFYEDEDMPQGGYIKAISDYSHLNVEDNQKSEANISELKTDNLERSNYATNLGVHRNNEDIGPCSMPYIHPFILKKLCEYQNQWSLLHKQRNIKTGCNGKLSTTNTETGCLSDATKLDQLSKLKNMRAMIFSPTDEIEGELLYLQNCLLDRVNSIKHSCEELIHRMITHLPQEIDAFRKKSWDMVLVNEHLREVKEAKKRGRKERRHKEAQEILAAATAAAASSRNSMLRKDTVDGISLTQQNPLKISTITRRPKETISRSSVAKVSSDKCSSDFKFPNLAMENALFCDVCWRTETLVNRIFVCSNCKVAVHLDCYRRLKDPTGPWRCELCEDASLQSSPKNKQLNSGENTSYRSQCSLCNGVTGAFRKTTDGEWVHAFCAEWLLESTYKRGQQTVVGGMDAIPKEKDANACCICHYRLGLCLKCSYGHCQAKFHPTCARSAGFFMNIKAIGGRFQHKAYCEKHSVEQREKVDNQHGAEELKNVKLVRVDLEKVRLLCERIIRREKLKRDLVVCSHGILASRRDCVAFSAMVRSSFTPGISSESATTSIDNPSYSEAFQRCDDFTTVDSAAIIHRRRSSCRPPIDVDRKTDDSSTSQLLDKRKLADRAVFSGKHLPQRPADHKGVKTVLQKERAMMARYQASLQKEDSSAACDSESC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.610
SRP064423	SRR2545915	Juvenile tuber	16.660
SRP108465	SRR5643513	five period of Gastrodia elata	12.280
	SRR5643514	five period of Gastrodia elata	10.900
	SRR5643515	five period of Gastrodia elata	11.570
	SRR5643524	five period of Gastrodia elata	10.920
	SRR5643525	five period of Gastrodia elata	14.100
	SRR5643528	five period of Gastrodia elata	11.320
	SRR5643658	five period of Gastrodia elata	13.010
	SRR5643659	five period of Gastrodia elata	16.750
	SRR5643660	five period of Gastrodia elata	16.810
	SRR5643661	five period of Gastrodia elata	16.550
	SRR5643662	five period of Gastrodia elata	16.460
	SRR5643663	five period of Gastrodia elata	17.080
	SRR5643664	five period of Gastrodia elata	18.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.600
SRP279888	Gastro	Gastrodia elata tuber	18.33
	Juven	Juvenile tuber	17.82
	Mother_Gastro	Mother tuber of Gastrodia elata	15.55
	Mother_Juven	Mother tuber of Juvenile	18.31