Detail information of GWHGAAEX017569/evm.TU.scaffold_83.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|57641174|ref|YP_183652.1|7.00E-78peptide chain release factor 1 [Thermococcus kodakarensis KOD1]
KOGKOG06880Peptide chain release factor 1 (eRF1)
nrgi|573925837|ref|XP_006650457.1|0PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like isoform X1 [Oryza brachyantha]
Swissprottr|P35614|ERF1Z_ARATH0Eukaryotic peptide chain release factor subunit 1-3
trEMBLtr|J3LRY7|J3LRY7_ORYBR0Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G38130.1}
TAIRAT3G266180eukaryotic release factor 1-3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000079862230879972-
Transcript Sequence

Network for GWHGAAEX017569

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03463.14eRF1_1491704.20E-20
PF03464.14eRF1_21773097.70E-44
PF03465.14eRF1_33134509.00E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03265ETF1, ERF1 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0006415Biological Processtranslational termination
GO:0003747Molecular Functiontranslation release factor activity
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.400
SRR2545915Juvenile tuber45.010
SRP108465SRR5643513five period of Gastrodia elata64.620
SRR5643514five period of Gastrodia elata39.660
SRR5643515five period of Gastrodia elata45.370
SRR5643524five period of Gastrodia elata40.610
SRR5643525five period of Gastrodia elata58.520
SRR5643528five period of Gastrodia elata62.170
SRR5643658five period of Gastrodia elata83.220
SRR5643659five period of Gastrodia elata241.660
SRR5643660five period of Gastrodia elata191.710
SRR5643661five period of Gastrodia elata150.490
SRR5643662five period of Gastrodia elata272.850
SRR5643663five period of Gastrodia elata345.540
SRR5643664five period of Gastrodia elata370.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1103.240
SRR6049655Rhizomagastrodiae_C368-T10_good_162.500
SRR6049656Rhizomagastrodiae_C368-T07_good_148.290
SRR6049657Rhizomagastrodiae_C368-T07_good_1138.070
SRR6049658Rhizomagastrodiae_C368-T04_good_165.660
SRR6049659Rhizomagastrodiae_C368-T04_good_178.810
SRR6049660Rhizomagastrodiae_C368-T01_good_168.680
SRR6049661Rhizomagastrodiae_C368-T04_good_154.170
SRR6049662Rhizomagastrodiae_C368-T01_good_145.270
SRR6049663Rhizomagastrodiae_C368-T01_good_137.400
SRR6049664Rhizomagastrodiae_C368-T10_good_139.510
SRR6049665Rhizomagastrodiae_C368-T10_good_139.510
SRP279888GastroGastrodia elata tuber 186.43
JuvenJuvenile tuber233.72
Mother_GastroMother tuber of Gastrodia elata 47.28
Mother_JuvenMother tuber of Juvenile 173.29