Gene detail

Detail information of GWHGAAEX017570/evm.TU.scaffold_83.19

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1968	1.00E-79	Replication factor C, subunit RFC1 (large subunit)
nr	gi\|672164432\|ref\|XP_008802093.1\|	0	PREDICTED: uncharacterized protein LOC103716027 [Phoenix dactylifera]
Swissprot	tr\|Q2R2B4\|RFC1_ORYSJ	1.00E-14	Replication factor C subunit 1
trEMBL	tr\|A5B201\|A5B201_VITVI	4.00E-150	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN67425.1}
TAIR	AT1G77620	1.00E-79	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000079	1005716	1056520	+

Transcript Sequence
>GWHTAAEX017570 CGCGGCTGAGAAAAGCTTTTGCATTAAGGCGGGCCTGGTCGATTTCCCGCTCTTTACCAAAAGTCCCCAGTCGATCTCAATCCCAGCTCCTCTGCCATACTCCCGCTTCTCTTCGATCATGAAGATTACACAAGATCAAGTAACAAGGAAGCGGTCAAGGCGAGGTGTTCAATTAAAACTTTCATTTTCTGTCAGTCATCAAGCCTGCGGAGCAAGAATTGCGGAAGCAACGGACCTGGATGCCTTGGTGGATAATGGAAGAAGCAATTTGGAAGAGGTAGAGAAGGAAGGTAAGAAGAAAAGGAACAAGACTATCAAATTACAAGAGGAGGATCCAAAAGAGCTTGCAGATAATAACATTGAGGCACAAGAATTGAGTTGTCTCAGGAGAAAAAGTAGCAGAAACTCGAAGAATAAACAATCTGAAGGCAAAACACTTGAAAAGAATAAAATACCAGCTATATATGGACACGGAGATCTAAATTCTAAGAAAAAGTTGTTAAACCAAAAATTTGAAAATGTAAAGGACTGTAATGCTGAAAGCTTACATATATGTGGTCTCATGGCTGAGGCTAAAAAAGCAGCTGAGGAAAACTTACAATTATCTGCTGGTAGGAAGGCACATCCATTTTTTTCCATCTGTAGGGCTAAAAGGAGGTCGTTAGAGACTAAAGAAGCAGAAAAATCTGTGGCCTTAAGCTGTCTCAACCTTGAGGAGGATTATTGCATTTCTCTTCCTCCAGTTCATGTGTTTGACATGGTAGAGGATGATGTCGCTGTGCTTAATTGGGAAGACTGGAAATTCTTAGAGAGAACAGTGCCAAAATTGGATGGCTGTAGAATGGAGATTGCATCTGTTTTTGAGGTTTCGACTAAGTGTTTAATAATGGAAGCTTTTTGCAGAAAGAACACAAAGTTTGATAATTTATTAGTTGATGAGAAAATGAATGACACATACAGGGCAAATGACCTTTCAAAAGTCTCAAGCGAATTGCTTTCTAAAGATCCGCTATTTTCTCAAGAAATGGTCTGTAGTCGCAGCAATTTTGTTTTTTCATCAGCTGATAGCATTGCAGATGTTCAGGATCAAGATAAGATGCACAAAGAAAGGTTAGCGTCATATTTTCAACGCCACATTTGTTTTACGGATTGCAGCTTATGGACTGAGAAGTACAGGCCTGAAATTTCTCTAGAGGTTTGTGGTAATGCTGATTCTGTGAAGCTTCTTAATGACTGGTTGAAATCTTGGCAAGAAAGAGGAGCACAGAACATTACAAATGGAAATAGTAAAAACTGTTCTTCTGCTGAAGATAGCACTAGCACTTATGATGCCGAGTCTGAAGGGGATGAAGTAGATTTTGGGGACTCTCTAAAAAATGTGCTCCTGATTACAGGGCCGGTTGGAAGTGGGAAATCTGCTGCAATATATGTTTGTGCCAGGGAGCAAGGGTATAGAGTAATAGAGGTAAATGCATCCAGCCTGAGAAATGGTACATACATGCGGCAAACATTTGGTAAAGGAGTAGATTCAATTGGACTTACTCACTGGCTAGCTGAGGATCAAGCTAATCAACACAGCAAGGATGGTCGGGATATGCAATGGGATGTGCCTGTTATTGGTGAAAATGAACTTGAGTCTGATTCAATTAAAATTGATTCAAAATTGCTCAGCATCGAGCATGCTGCAGAGAAGAGCTCACATTATCAAATTGCAAATAAAACACTGTTTCTATTTGAGGAAGTGGATGTTGTTTTTGAGGAAGATCATGGATTTGTTTCTACTATATTTAAACTGGCTGAAACAACAAAAAGACCCATCATACTGACAAGCAATTCCAAGCAGCCTGTGTTACCCCATCTCTTGGATCGGCTTGTTTTGGACTTCAAAGCTCCATCTTACAATGAACTACTTTACTATGCATCCATGGTTTGTGATTTTGAGAAGGTTCATGTATCCTACTGCCTTCTTGAGCACATAATCAAGGCTTGTGCGGGTGATATTAGAAGAGTACTCATGCTTCTACAGTTTTGGTGCCAGGGGGTTCAAGATAAAAGCGAACAAACCATTCAAGTAACCAAATGCCCCGTGCCATTTGATGTTGGTGCCGCACATTTGGCAATTCCCAAAGTGATCCCTTGGGAGTTTCGGTGCAAACTGTCAGAATTTTTGGAAGAAGAGATCAGTAAGACTGTTCATTCAATGGAAGAAAATTCCATTGCAAAAGACGCTTTCTTTCACAAGGCCAACTCATGTGAGAATGATGATCCTGTGGCGACGATAAACACCTCGACTGGTTCTACAAGTAGGAAGAAAAGGAAGTTGAGGAAACGCTCTATCGTTGATCAGACAGATATTCAAGATCATATGAGCCTTCTTGAAGACAGTTTGTATGATTCAGATTCTCCGTCAAAGTTCTTTGAAAGCAACGCAAGACCTAAACGCAGTGTGGTGTTTTCCTCGCAGTCTGGTGATGAGCTTTCTTTTGATGAGCTTAAACATGAAGATACATTTGCAAATCAGATGCAATCTGCAGATGAGCTCATGCTTGAAGATACATCAACAGCAAAATCTATTAACGGCTACAATTTTCAAATTGTCAATACCTCTCCTCTTCGACAAAGTCAGGATGAGGCATGTGAAGCTTATCATCTTAATTGGATGGACGAGTCACAAATTGCCTCGGTTGTTCAACTTACTAGTGACATTTCTAACTCAGCATCAACTTCTCATGTCTACAATGCATCCATAGTACAGGTTGCACTTGGGGGCAGTGCCGAATTATGCAAACGCTGGGAAGTCAATTCCGAGTTGCTTAAAAGGGATCATCAAATTGGATGTCTTCAAAATGAAGAGCCCAGACCAAGCCATAATCACTCAGTGGATCATTGCAGCCCTCTCAACTTAAGTACTACTTGCTTTTATGAAGCTCCAACAGTTTCAGAATCATGGAGAAGACTGCAAAGTTTCCGTAATGAATACTCAAAGTTGCTGTCACCGCACTCTAAAGACATTTCTTTGGTGGCAAGCTTAACTTCCGGACTCACCGATATGATATCAGAAGTCGACATTATATTAAGCAGATGCAATTCATTCATTTGTGATAATTTTGAGCCAACATCCGTTCATTGTCTCGAACCAGATTCTATGTCATGGTATGAGGAACAAGCAGAGATGGCGGTCACCTTTGCTCAGCATGGACTTAGCTTGTACACAGCAGACCTGGCAGCCGTTGGACCGCATTTGGGTTGTGATGATGCATCAGATTTGGCTCAGGAGGTGCTGGCTTGCAGCAGAGGCAGCACTGCACTGGGGATGATGCTTGCTCGGGAAAGCCTTACCGGCCAAAATTTCTGTTTTAAGGATTCAGATCTAAAGTTGTCCCCACACATGATGCCGTTTGGAAGGGCATCATCAGCGGCTGAACTTCACAGTGCCATTCTTCCAGTAGTTCCTGCAAGGTTGTCTATGGCATTGAAAGGCGCTGCATTCCATGAATATCTATCGTTTGTGGGTCAGATATCGAGATATGAATGCTCACGGATCGCAGAGTGCTTAGCAGAGAAGCAAAGGGGGAGATGGAGAAGTAGAATGCACTACCTGTGTTCTGGCGCACATCAGCTCACTTTAGAACAAACAGAGCTTTTGGCTCAAAGATCTTGCTTCACGAGAAGCAGCAGATCCTTAGAGTACACGAGGCATGGAAGTGATTAATTCATGCAATTTGGCTATTAATAAGTTAATACTATTTTTGTTTATATAATCACGGCAATTATAGTTAGCACACAACCACTAATTAAAATTCTTGAGTCTAGCTCATGCATCATGGTGTTTAACCCTAATCTACCTTGGGTTCTAGCAAATCCACATGGAATGCAAAGACTGGATCACATGCTGATAAGTCCCTGTGTACAAGAGTAGGGCATGGGCGACACTTGACATTTGCCAGTCCCCAAAGTTAAATGTTCTATCTTTAGATTTAGTTCCTTAAGATAGCAATATGGGATGCTTTTTTTTCTTTCAACTTTTTTTTTTTGAGTGCCAATTAGAGCTATATGCTCAAAAGATGCCAATGACCAGTTATATTCCTT

Network for GWHGAAEX017570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	422	589	0.0001

Protein Sequence

>GWHPAAEX017570
MKITQDQVTRKRSRRGVQLKLSFSVSHQACGARIAEATDLDALVDNGRSNLEEVEKEGKKKRNKTIKLQEEDPKELADNNIEAQELSCLRRKSSRNSKNKQSEGKTLEKNKIPAIYGHGDLNSKKKLLNQKFENVKDCNAESLHICGLMAEAKKAAEENLQLSAGRKAHPFFSICRAKRRSLETKEAEKSVALSCLNLEEDYCISLPPVHVFDMVEDDVAVLNWEDWKFLERTVPKLDGCRMEIASVFEVSTKCLIMEAFCRKNTKFDNLLVDEKMNDTYRANDLSKVSSELLSKDPLFSQEMVCSRSNFVFSSADSIADVQDQDKMHKERLASYFQRHICFTDCSLWTEKYRPEISLEVCGNADSVKLLNDWLKSWQERGAQNITNGNSKNCSSAEDSTSTYDAESEGDEVDFGDSLKNVLLITGPVGSGKSAAIYVCAREQGYRVIEVNASSLRNGTYMRQTFGKGVDSIGLTHWLAEDQANQHSKDGRDMQWDVPVIGENELESDSIKIDSKLLSIEHAAEKSSHYQIANKTLFLFEEVDVVFEEDHGFVSTIFKLAETTKRPIILTSNSKQPVLPHLLDRLVLDFKAPSYNELLYYASMVCDFEKVHVSYCLLEHIIKACAGDIRRVLMLLQFWCQGVQDKSEQTIQVTKCPVPFDVGAAHLAIPKVIPWEFRCKLSEFLEEEISKTVHSMEENSIAKDAFFHKANSCENDDPVATINTSTGSTSRKKRKLRKRSIVDQTDIQDHMSLLEDSLYDSDSPSKFFESNARPKRSVVFSSQSGDELSFDELKHEDTFANQMQSADELMLEDTSTAKSINGYNFQIVNTSPLRQSQDEACEAYHLNWMDESQIASVVQLTSDISNSASTSHVYNASIVQVALGGSAELCKRWEVNSELLKRDHQIGCLQNEEPRPSHNHSVDHCSPLNLSTTCFYEAPTVSESWRRLQSFRNEYSKLLSPHSKDISLVASLTSGLTDMISEVDIILSRCNSFICDNFEPTSVHCLEPDSMSWYEEQAEMAVTFAQHGLSLYTADLAAVGPHLGCDDASDLAQEVLACSRGSTALGMMLARESLTGQNFCFKDSDLKLSPHMMPFGRASSAAELHSAILPVVPARLSMALKGAAFHEYLSFVGQISRYECSRIAECLAEKQRGRWRSRMHYLCSGAHQLTLEQTELLAQRSCFTRSSRSLEYTRHGSD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.960
SRP064423	SRR2545915	Juvenile tuber	28.910
SRP108465	SRR5643513	five period of Gastrodia elata	4.440
	SRR5643514	five period of Gastrodia elata	3.570
	SRR5643515	five period of Gastrodia elata	3.510
	SRR5643524	five period of Gastrodia elata	3.980
	SRR5643525	five period of Gastrodia elata	4.010
	SRR5643528	five period of Gastrodia elata	3.980
	SRR5643658	five period of Gastrodia elata	4.470
	SRR5643659	five period of Gastrodia elata	4.630
	SRR5643660	five period of Gastrodia elata	5.660
	SRR5643661	five period of Gastrodia elata	4.840
	SRR5643662	five period of Gastrodia elata	4.850
	SRR5643663	five period of Gastrodia elata	5.450
	SRR5643664	five period of Gastrodia elata	4.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.020
SRP279888	Gastro	Gastrodia elata tuber	5.81
	Juven	Juvenile tuber	10.25
	Mother_Gastro	Mother tuber of Gastrodia elata	6.02
	Mother_Juven	Mother tuber of Juvenile	9.37