Gene detail

Detail information of GWHGAAEX017573/evm.TU.scaffold_83.25

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|183222158\|ref\|YP_001840154.1\|	1.00E-14	RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOG	KOG0118	0	FOG: RRM domain
nr	gi\|694359047\|ref\|XP_009359714.1\|	0	PREDICTED: oligouridylate-binding protein 1-like isoform X1 [Pyrus x bretschneideri]
Swissprot	tr\|Q9LQI9\|UBP1B_ARATH	0	Oligouridylate-binding protein 1B
trEMBL	tr\|A0A061GSY2\|A0A061GSY2_THECC	0	Oligouridylate binding protein 1B isoform 1 {ECO:0000313\|EMBL:EOY30209.1}
TAIR	AT1G17370	0	oligouridylate binding protein 1B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000079	1743698	1765936	-

Transcript Sequence
>GWHTAAEX017573 GAATTTTCTCCGACATCGAACAAACTTCCGAACATCTCACCCTCTGAATTAGCTTTCCTCGGCTTTTATAGTTCAGTGTTCCTTCTTCCCTCAAATTCGAGGGATTTTTTTTTATTTCTTTATTGCCTTCTTCCTTGGCTCCATTTCAATCTTCTTTTTACCTTTTTGTTGTATTTTCCACATCGCTCCATAAACCCTAACCCTTTTCTGATTTTCCGATTTGATTCGATTCGCGCTATATAATTTTTCTTCCGAACAAACCCTAGATCGGGAAGGATGCAGCAGCAGCGGCTCAAGCACCAGGCTTTGATGCAGCAGGCTCTCATCCAGCAGCATTCACTTCTTCAGCAGCAACAGCAATCTCTTTACCCTCATCCTGGGCTTTTAGCTCCTCCACAGATAGAACCCATTCCGAGTGGAAATCTGCCTCCTGGATTTGATTCAAGTTCATGCCGCAGTATATATGTTGGAAATATTCATGTTCAAGTTACAGACGCACTTCTTCAAGAGGTTTTTCAAAGTACTGGTCCTGTTGAGGGATGCAAGCTTATCAGAAAGGAAAAGTCTTCTTATGGGTTTGTAGATTACTTTGATCGTCGATCGGCTGCGCTTGCCTTAGTTACACTTAATGGAAGGCATCTGTTTGGCCAACCTATTAAAGTTAATTGGGCATATACCAGTACCCAGAGAGAAGACACTTCAGGTCATTTCCACATTTTTGTTGGTGATCTTAGCTCTGAGGTTACGGATGCTGCTTTGTTTGCCTGTTTCTCTGTTTATCCTAGCATCTCGGATGCAAAGGTTATGTGGGATCAAAAAACTGGACGCTCAAGGGGGTTTGGTTTTGTGTCTTTTCGGAATCAACAAGATGCTCAAAGTGCCATCAATGACTTGAGTGGTAAATGGTTGAGCAACAGGCAGATCCGGTGCAACTGGGCTACCAAAGGTGCTAGCACTGCTGAGGATAAACAGTTTTCAGATACCAAAAGTGTTGTGGAATTAACTAACTCTTCTACAGAAGAGATTAAAGATGGCCCAAAAGATGATGCTCCGGAGAACAACCTGCAATACACCTCCGTTTACGTGGGAAATCTTTCTCCAGAGGTTAATCAAGTAGATCTCCACAGGCTCTTTCACACCCTTGGTGCTGGTCAGATTGAAGAAGTTCGCATTCAGCGCGACAAGGGATTTGGTTTTATAAGGTACAGTAATCACTCTGAAGCTGCTCTAGCTATCCAGGTAGCTAATGGTCGAATCCTTGGTGGGAAGCCAATTAAGTGTTCTTGGGGAAGCAAACCGACACCTCCTGGAACAGCCTCAAAGCCTCTTCCGGCCCCCAGTGCAGTCTCCTTCCCTGTGCTTTCAGCTGCTGATTTGCTTGCTTATGAGAGAGCGTTAGCACTGAGCAAGATGGGAGCAGGGCAGGGGTTAATGCCTGCCGGCCAAGCCAGCAATCCTCTCCTCAAGCAGCAAGCAGGCCTGCCTTTGGGCGTTGGAGCCAGCCAGGCTATCTATGATGCCGGATTCCAGAATATGGCTGCTGCTCAGCAGCTCATGTATTTTTAACCAAGGTTTTACTTTTCGATCACTGAATCTCGCATATTTATTGTCAGTGTTGTATTTTCCTTTGTTTAGTGTGATTATAAATTCACATTCTTAGTTTCTTATTGGGCAGTAGCTTTATATTTTTCTTACTAAAACGGAGTTCTGTAGAATTCCTTTTTTATTTTTTTGTTCTTCTTAAATAATGACAATTTATAATTGGCTGGATGTGTGTGATTTGTTAAAATTAACCTTGACCGATTATGTTTGGTAGACAAATGTTCTTCAATCACCTCTATTGGTGCCGTTTCTGCGTATCTCAAAGTTTCTATTATAATGTGTTCATTGTATATGCGATGATGACATGTTCTTATTATGGTGTTATAATATGTTGTTTGCCGCCCATTCTTGGTTTTTTTCACTATGGTGAGTATTTAATCAGTCAAATAATACCCTATTGTAATGCTTGCCCTCACTGAGTCAAAAAGGTATAAAGGGGCTGGTTTTTTGTGGAGATGGAATTCTAGATAAAAGATCAAGTGCAAGAGGCTAACATGGAAGAGTTATATCGAAGAAGCATGTGCTCCTTTTACAATAAATAGAGCACTCAACCTTTCTGGCCTCAAATGCCCCCAAAGTCTTCGTGATGGGAAAATGAACACATTATTGTGTTGCCGTTTTGGAGCATAAATCTTGGCCAAGTTCATCATCATAGTGGCTGCTTAGGCTTGCATGGTACTGTCACACAACCTTTTTTTTGTTGTAATCTGCCAATTGTGATGAACTCAAGCATATGCTTGATCTATTGATACATGTTTGGAGTTTTTTTTTTT

Network for GWHGAAEX017573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	62	128	3.50E-13
PF00076.21	RRM_1	147	217	2.70E-19
PF00076.21	RRM_1	268	334	3.00E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.100
SRP064423	SRR2545915	Juvenile tuber	42.690
SRP108465	SRR5643513	five period of Gastrodia elata	46.770
	SRR5643514	five period of Gastrodia elata	58.230
	SRR5643515	five period of Gastrodia elata	48.380
	SRR5643524	five period of Gastrodia elata	52.320
	SRR5643525	five period of Gastrodia elata	61.680
	SRR5643528	five period of Gastrodia elata	60.630
	SRR5643658	five period of Gastrodia elata	69.750
	SRR5643659	five period of Gastrodia elata	43.440
	SRR5643660	five period of Gastrodia elata	44.060
	SRR5643661	five period of Gastrodia elata	44.330
	SRR5643662	five period of Gastrodia elata	42.120
	SRR5643663	five period of Gastrodia elata	44.990
	SRR5643664	five period of Gastrodia elata	42.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	61.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	61.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	61.050
SRP279888	Gastro	Gastrodia elata tuber	46.88
	Juven	Juvenile tuber	48.92
	Mother_Gastro	Mother tuber of Gastrodia elata	51.99
	Mother_Juven	Mother tuber of Juvenile	69.61