Detail information of GWHGAAEX017587/evm.TU.scaffold_83.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG42061.00E-119Spliceosomal protein snRNP-U1A/U2B
nrgi|695002751|ref|XP_009381848.1|8.91E-141PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q0DKM4|RU1A_ORYSJ1.00E-124U1 small nuclear ribonucleoprotein A
trEMBLtr|M0S4G4|M0S4G4_MUSAM3.00E-141Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P02230_001}
TAIRAT2G475801.00E-119spliceosomal protein U1A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007937767133803115+
Transcript Sequence

Network for GWHGAAEX017587

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1561267.50E-11
PF00076.21RRM_12092688.10E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11091SNRPA Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms105.900
SRR2545915Juvenile tuber107.910
SRP108465SRR5643513five period of Gastrodia elata64.800
SRR5643514five period of Gastrodia elata62.650
SRR5643515five period of Gastrodia elata61.300
SRR5643524five period of Gastrodia elata59.050
SRR5643525five period of Gastrodia elata47.040
SRR5643528five period of Gastrodia elata52.970
SRR5643658five period of Gastrodia elata50.000
SRR5643659five period of Gastrodia elata75.560
SRR5643660five period of Gastrodia elata86.690
SRR5643661five period of Gastrodia elata85.060
SRR5643662five period of Gastrodia elata88.880
SRR5643663five period of Gastrodia elata76.650
SRR5643664five period of Gastrodia elata91.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_174.880
SRR6049655Rhizomagastrodiae_C368-T10_good_176.340
SRR6049656Rhizomagastrodiae_C368-T07_good_179.320
SRR6049657Rhizomagastrodiae_C368-T07_good_178.930
SRR6049658Rhizomagastrodiae_C368-T04_good_181.990
SRR6049659Rhizomagastrodiae_C368-T04_good_186.890
SRR6049660Rhizomagastrodiae_C368-T01_good_187.530
SRR6049661Rhizomagastrodiae_C368-T04_good_179.830
SRR6049662Rhizomagastrodiae_C368-T01_good_164.990
SRR6049663Rhizomagastrodiae_C368-T01_good_173.040
SRR6049664Rhizomagastrodiae_C368-T10_good_166.150
SRR6049665Rhizomagastrodiae_C368-T10_good_166.150
SRP279888GastroGastrodia elata tuber 106.85
JuvenJuvenile tuber82.19
Mother_GastroMother tuber of Gastrodia elata 54.36
Mother_JuvenMother tuber of Juvenile 52.81