Detail information of GWHGAAEX017593/evm.TU.scaffold_835.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1784 | 1.00E-54 | Small Nuclear ribonucleoprotein splicing factor |
| nr | gi|695018720|ref|XP_009396334.1| | 6.26E-61 | PREDICTED: U6 snRNA-associated Sm-like protein LSm8 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8VYI0|LSM8_ARATH | 3.00E-55 | Sm-like protein LSM8 {ECO:0000305} |
| trEMBL | tr|M0SNL1|M0SNL1_MUSAM | 2.00E-61 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P13460_001} |
| TAIR | AT1G65700 | 1.00E-54 | Small nuclear ribonucleoprotein family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000827 | 1936 | 9448 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017593
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01423.21 | LSM | 7 | 73 | 7.50E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12627 | LSM8 | Spliceosome | map03040 |
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0005688 | Cellular Component | U6 snRNP |
| GO:0046540 | Cellular Component | U4/U6 x U5 tri-snRNP complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 133.940 |
| SRR2545915 | Juvenile tuber | 154.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 78.290 |
| SRR5643514 | five period of Gastrodia elata | 84.690 | |
| SRR5643515 | five period of Gastrodia elata | 69.570 | |
| SRR5643524 | five period of Gastrodia elata | 80.620 | |
| SRR5643525 | five period of Gastrodia elata | 74.760 | |
| SRR5643528 | five period of Gastrodia elata | 63.410 | |
| SRR5643658 | five period of Gastrodia elata | 65.040 | |
| SRR5643659 | five period of Gastrodia elata | 60.530 | |
| SRR5643660 | five period of Gastrodia elata | 59.750 | |
| SRR5643661 | five period of Gastrodia elata | 58.520 | |
| SRR5643662 | five period of Gastrodia elata | 52.560 | |
| SRR5643663 | five period of Gastrodia elata | 59.310 | |
| SRR5643664 | five period of Gastrodia elata | 51.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 73.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 52.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 68.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 57.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 66.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 71.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 53.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 53.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.80 |
| Juven | Juvenile tuber | 79.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 76.12 | |
| Mother_Juven | Mother tuber of Juvenile | 82.87 |