Detail information of GWHGAAEX017596/evm.TU.scaffold_84.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-125 | FOG: PPR repeat |
| nr | gi|672170455|ref|XP_008805285.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SS83|PP220_ARATH | 6.00E-126 | Pentatricopeptide repeat-containing protein At3g09040, mitochondrial (Precursor) |
| trEMBL | tr|I1H8Y0|I1H8Y0_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G72380.1} |
| TAIR | AT4G13650 | 2.00E-125 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 282532 | 286325 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017596
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 190 | 216 | 0.0073 |
| PF13041.5 | PPR_2 | 291 | 336 | 9.20E-10 |
| PF01535.19 | PPR | 393 | 418 | 0.028 |
| PF01535.19 | PPR | 493 | 519 | 0.89 |
| PF13041.5 | PPR_2 | 592 | 631 | 2.70E-08 |
| PF13041.5 | PPR_2 | 789 | 837 | 7.70E-10 |
| PF01535.19 | PPR | 865 | 885 | 1.2 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.690 |
| SRR2545915 | Juvenile tuber | 2.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.230 |
| SRR5643514 | five period of Gastrodia elata | 2.440 | |
| SRR5643515 | five period of Gastrodia elata | 3.040 | |
| SRR5643524 | five period of Gastrodia elata | 2.210 | |
| SRR5643525 | five period of Gastrodia elata | 0.900 | |
| SRR5643528 | five period of Gastrodia elata | 0.800 | |
| SRR5643658 | five period of Gastrodia elata | 0.570 | |
| SRR5643659 | five period of Gastrodia elata | 4.450 | |
| SRR5643660 | five period of Gastrodia elata | 3.480 | |
| SRR5643661 | five period of Gastrodia elata | 4.100 | |
| SRR5643662 | five period of Gastrodia elata | 4.940 | |
| SRR5643663 | five period of Gastrodia elata | 4.140 | |
| SRR5643664 | five period of Gastrodia elata | 3.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.31 |
| Juven | Juvenile tuber | 1.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.13 | |
| Mother_Juven | Mother tuber of Juvenile | 0.48 |