Detail information of GWHGAAEX017602/evm.TU.scaffold_84.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-83 | FOG: PPR repeat |
| nr | gi|743885388|ref|XP_010909909.1| | 1.22E-106 | PREDICTED: pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like [Elaeis guineensis] |
| Swissprot | tr|Q9LG23|PPR82_ARATH | 1.00E-83 | Pentatricopeptide repeat-containing protein At1g55890, mitochondrial (Precursor) |
| trEMBL | tr|M0RGQ6|M0RGQ6_MUSAM | 8.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P09300_001} |
| TAIR | AT1G55890 | 3.00E-83 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 766464 | 767895 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017602
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 122 | 147 | 0.054 |
| PF13041.5 | PPR_2 | 186 | 233 | 6.90E-12 |
| PF13041.5 | PPR_2 | 256 | 305 | 2.20E-14 |
| PF01535.19 | PPR | 368 | 392 | 1.3 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.230 |
| SRR2545915 | Juvenile tuber | 1.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.370 |
| SRR5643514 | five period of Gastrodia elata | 3.200 | |
| SRR5643515 | five period of Gastrodia elata | 1.460 | |
| SRR5643524 | five period of Gastrodia elata | 2.400 | |
| SRR5643525 | five period of Gastrodia elata | 0.900 | |
| SRR5643528 | five period of Gastrodia elata | 0.530 | |
| SRR5643658 | five period of Gastrodia elata | 0.350 | |
| SRR5643659 | five period of Gastrodia elata | 2.890 | |
| SRR5643660 | five period of Gastrodia elata | 2.840 | |
| SRR5643661 | five period of Gastrodia elata | 1.990 | |
| SRR5643662 | five period of Gastrodia elata | 3.350 | |
| SRR5643663 | five period of Gastrodia elata | 2.290 | |
| SRR5643664 | five period of Gastrodia elata | 2.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.82 |
| Juven | Juvenile tuber | 2.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.70 | |
| Mother_Juven | Mother tuber of Juvenile | 0.64 |