Detail information of GWHGAAEX017603/evm.TU.scaffold_84.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 4.00E-63 | MADS box transcription factor |
| nr | gi|743859302|ref|XP_010942683.1| | 8.55E-85 | PREDICTED: MADS-box protein SVP-like [Elaeis guineensis] |
| Swissprot | tr|Q9FVC1|SVP_ARATH | 2.00E-72 | MADS-box protein SVP |
| trEMBL | tr|K9LW04|K9LW04_9ASPA | 4.00E-79 | MADS11-like protein 1 {ECO:0000313|EMBL:AFP65769.1} |
| TAIR | AT4G24540 | 4.00E-63 | AGAMOUS-like 24 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 818142 | 879260 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017603
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 4.10E-25 |
| PF01486.16 | K-box | 93 | 169 | 1.60E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 179.490 |
| SRR2545915 | Juvenile tuber | 206.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.290 |
| SRR5643514 | five period of Gastrodia elata | 28.100 | |
| SRR5643515 | five period of Gastrodia elata | 30.130 | |
| SRR5643524 | five period of Gastrodia elata | 26.640 | |
| SRR5643525 | five period of Gastrodia elata | 30.510 | |
| SRR5643528 | five period of Gastrodia elata | 26.960 | |
| SRR5643658 | five period of Gastrodia elata | 29.900 | |
| SRR5643659 | five period of Gastrodia elata | 76.290 | |
| SRR5643660 | five period of Gastrodia elata | 83.640 | |
| SRR5643661 | five period of Gastrodia elata | 66.160 | |
| SRR5643662 | five period of Gastrodia elata | 94.510 | |
| SRR5643663 | five period of Gastrodia elata | 96.090 | |
| SRR5643664 | five period of Gastrodia elata | 108.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 72.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 87.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 84.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 95.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 60.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 60.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.11 |
| Juven | Juvenile tuber | 16.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.18 | |
| Mother_Juven | Mother tuber of Juvenile | 12.39 |