Detail information of GWHGAAEX017604/evm.TU.scaffold_84.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4764 | 1.00E-07 | Uncharacterized conserved protein |
| nr | gi|743846802|ref|XP_010938935.1| | 3.77E-14 | PREDICTED: probable 26S proteasome complex subunit sem1-1 [Elaeis guineensis] |
| Swissprot | tr|Q9XIR8|SEM11_ARATH | 3.00E-08 | Probable 26S proteasome complex subunit sem1-1 |
| trEMBL | tr|M0SCZ0|M0SCZ0_MUSAM | 4.00E-14 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P08730_001} |
| TAIR | AT1G64750 | 1.00E-07 | deletion of SUV3 suppressor 1(I) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 982018 | 991772 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017604
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05160.12 | DSS1_SEM1 | 11 | 67 | 2.30E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10881 | SHFM1, DSS1 | Proteasome | map03050 |
| Homologous recombination | map03440 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006406 | Biological Process | mRNA export from nucleus |
| GO:0043248 | Biological Process | proteasome assembly |
| GO:0008541 | Cellular Component | proteasome regulatory particle, lid subcomplex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 343.240 |
| SRR2545915 | Juvenile tuber | 275.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 430.110 |
| SRR5643514 | five period of Gastrodia elata | 532.170 | |
| SRR5643515 | five period of Gastrodia elata | 381.570 | |
| SRR5643524 | five period of Gastrodia elata | 457.250 | |
| SRR5643525 | five period of Gastrodia elata | 558.450 | |
| SRR5643528 | five period of Gastrodia elata | 361.620 | |
| SRR5643658 | five period of Gastrodia elata | 349.610 | |
| SRR5643659 | five period of Gastrodia elata | 288.160 | |
| SRR5643660 | five period of Gastrodia elata | 307.230 | |
| SRR5643661 | five period of Gastrodia elata | 320.600 | |
| SRR5643662 | five period of Gastrodia elata | 411.600 | |
| SRR5643663 | five period of Gastrodia elata | 372.590 | |
| SRR5643664 | five period of Gastrodia elata | 424.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 334.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 948.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 529.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 364.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 366.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 345.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 458.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 304.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 465.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 535.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 417.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 417.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 868.43 |
| Juven | Juvenile tuber | 473.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 456.40 | |
| Mother_Juven | Mother tuber of Juvenile | 203.32 |