Detail information of GWHGAAEX017605/evm.TU.scaffold_84.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|328543334|ref|YP_004303443.1| | 4.00E-34 | DNA methylase [Polymorphum gilvum SL003B-26A1] |
| nr | gi|159461700|gb|ABW96889.1| | 0 | CMT-type DNA-methyltransferase [Elaeis guineensis] |
| Swissprot | tr|Q9AXT8|CMT1_MAIZE | 0 | DNA (cytosine-5)-methyltransferase 1 |
| trEMBL | tr|B4XTS9|B4XTS9_ELAGV | 0 | Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417} |
| TAIR | AT1G69770 | 0 | chromomethylase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 1102436 | 1114083 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017605
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01426.17 | BAH | 228 | 343 | 4.60E-13 |
| PF00385.23 | Chromo | 500 | 537 | 2.40E-08 |
| PF00145.16 | DNA_methylase | 547 | 905 | 2.50E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00558 | DNMT1, dcm | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0003682 | Molecular Function | chromatin binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.170 |
| SRR2545915 | Juvenile tuber | 1.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.710 |
| SRR5643514 | five period of Gastrodia elata | 6.810 | |
| SRR5643515 | five period of Gastrodia elata | 3.240 | |
| SRR5643524 | five period of Gastrodia elata | 4.940 | |
| SRR5643525 | five period of Gastrodia elata | 0.230 | |
| SRR5643528 | five period of Gastrodia elata | 0.150 | |
| SRR5643658 | five period of Gastrodia elata | 0.240 | |
| SRR5643659 | five period of Gastrodia elata | 2.470 | |
| SRR5643660 | five period of Gastrodia elata | 2.490 | |
| SRR5643661 | five period of Gastrodia elata | 2.500 | |
| SRR5643662 | five period of Gastrodia elata | 2.090 | |
| SRR5643663 | five period of Gastrodia elata | 2.370 | |
| SRR5643664 | five period of Gastrodia elata | 1.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.97 |
| Juven | Juvenile tuber | 1.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.28 | |
| Mother_Juven | Mother tuber of Juvenile | 0.67 |