Gene detail

Detail information of GWHGAAEX017606/evm.TU.scaffold_84.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|42523804\|ref\|NP_969184.1\|	2.00E-33	RNA pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
KOG	KOG1919	0	RNA pseudouridylate synthases
nr	gi\|672160840\|ref\|XP_008800212.1\|	0	PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Phoenix dactylifera]
Swissprot	tr\|Q9SVS0\|PUS6_ARATH	0	RNA pseudouridine synthase 6, chloroplastic (Precursor)
trEMBL	tr\|M0TUR5\|M0TUR5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P29630_001}
TAIR	AT4G21770	0	Pseudouridine synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	1245414	1279863	-

Transcript Sequence
>GWHTAAEX017606 GGAACCTAGAAAATTTTATGAGCTTTTCCTTCGTTCACCTCAAGTGCCAAACTCAGCGGATAGGCCATAATTTAATACAAGTTGTATCATGCTCACTTCATCTTCCATCTTCTCAGCATCCGCTTTTCCTCTGTTTTGGGCAGCCTGCTGTCGAACCCTAACTGTGGTTCCACTACCTTTCCTAACTTCTCACACATTATTCGCCGCTGCAGCATTTTCCTCTTTCCGAAGCTACCGCCGCCTCAACCGGAAGGACCATTGGTGGGCTCCAAAAGCAAAGATCGTTCTTTCCCGTGGTTCGCAAGGGGATGCCTTTTCCACTGAAAAAAGCGTCTCTGCTGATGGCTACAACACGCCTTGGTATACAGAATACAGTCGTTTACTTCCATGTCCATCGCACAATACAGCACCTAGAATTGAGCACCTTGTTGTTTCTGAAGAAGGCAATGTTCTAGACTACATCAGCAAAGCTTTGCAACTTCCTTCATTGTATGTTGCAGATCTAATTCATTTTGGTGCCATTCACTATGCATTGGTTTGCCCAAGGCCCCCTCCAAGTGCTACTGCTGAACAAATTCAGATCTACAGGAAAGTTACTGAACCATCCGTTCTACGAAAGAGATCTTCTCTCAAGGGCAAAACTGTGCGAAAAGCACAGAAAACATATCGGATTACTGATGCAAATGAATTTGTTGAAGTTGGAACGTACCTTCGTGTTCATGTACACCCAAAAAGATATCCAAGATGCTATGAGGTTGATTGGAAGTCTAGAATCATTGCCGTAACGGATTCCTATGTTGTTCTGGACAAACCAGCTGCAATTTCGGTTGGAGGATCATCAGATAACATAGAAGAAACTTGTGCAACATTTACTTCTCGTGTTTTGGGACTTAGAACTCCTTTGAAGACCACCCACCAGCTAGATAACTGTACAGAAGGATGCCTTGTACTTGCAAAAACCAAGGAATTCTGTTCCGCTTTCCATGAAATAATTAGGGAAAGACAGGTGAAAAAGCTGTACCTTGCTCTCACTGCTGCGCCTGTGCCAACTGGAATATTATCCCATTACATGCGCCCGGTGAACCTTGCCCCAAGGCTAGTTTCACGAGAGTATATCGTGGGCTGGCATTTGTGCCAGCTGGAGGTCTTGGAGTGCAAGGAGGTTCCCTGGCCAAAAGCTCAAGTCGTGAAATCACACAGCATTGAAGATTGTGGGTGGCCTTCAAAGAAGACCGCCTATGAATGTAAGATCAATCTGCTAACAGGGAAAACACACCAGGTGAGAGCGCAGCTGGCTGCTATCGGTTCGCCCATAGTCGGAGACTCTATGTACATGCCCGCTGCCATGGCCGAAATTTCCTATCCTTGCCTAAATCCGTTTGGTGTTTTGGGGAGTGCAGAGTGCTTGAGCAATGATGACAGAGCGGCTGCCATGTCAGGGTGGATTTCATGCCATGGCAAGGAGCCCAATTCTGCTATTGGTCTGCAGGCATCTCAGATCTCTTGGAACCATGGCGAGTGCGCCTACCAGGCTGGGGTTCCATGCTGGGTTGATACAGATCACTTGTTTAGTTAAACGGCCACTTCTGATGTGTTTTCAACAAACACAGATTTCGCTTCATAGAGATGGTGAGAAATTAATAGTCACCTCAACTTAGGTACAAGTATAATTTTGCAAATGCAGTCTTGTGTCACCCCTACTCTTTTGTGTATACAATATCCATTATTAACCTTGACATCTCTATCACTTAATTTATCGATGTTTTCCACTTTGATAAGAAATATTATGCCCTTCCCAAATATTCACCTATAAAACTGTAACATAGCTATTGTTTAGGTTGGAGAAAAAATACACAGTAATTTGATCCTTGTGTGTCAATAGATCATTTAGGCTTTAGAAGGTTTGTTGATGCATTTTCCTTTGTCAAAATTTTATTAGGGAAGAGCATTACCTGAACTAATGTGGG

Network for GWHGAAEX017606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00849.21	PseudoU_synth_2	236	404	3.60E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0001522	Biological Process	pseudouridine synthesis
GO:0009451	Biological Process	RNA modification
GO:0009982	Molecular Function	pseudouridine synthase activity
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.200
SRP064423	SRR2545915	Juvenile tuber	5.140
SRP108465	SRR5643513	five period of Gastrodia elata	5.500
	SRR5643514	five period of Gastrodia elata	5.240
	SRR5643515	five period of Gastrodia elata	5.390
	SRR5643524	five period of Gastrodia elata	4.830
	SRR5643525	five period of Gastrodia elata	4.930
	SRR5643528	five period of Gastrodia elata	5.590
	SRR5643658	five period of Gastrodia elata	6.120
	SRR5643659	five period of Gastrodia elata	5.390
	SRR5643660	five period of Gastrodia elata	4.900
	SRR5643661	five period of Gastrodia elata	5.030
	SRR5643662	five period of Gastrodia elata	5.890
	SRR5643663	five period of Gastrodia elata	5.470
	SRR5643664	five period of Gastrodia elata	4.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.270
SRP279888	Gastro	Gastrodia elata tuber	6.30
	Juven	Juvenile tuber	4.34
	Mother_Gastro	Mother tuber of Gastrodia elata	4.74
	Mother_Juven	Mother tuber of Juvenile	2.77