Gene detail

Detail information of GWHGAAEX017608/evm.TU.scaffold_84.26

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2319	2.00E-154	Vacuolar assembly/sorting protein VPS9
nr	gi\|672118277\|ref\|XP_008782345.1\|	0	PREDICTED: vacuolar protein sorting-associated protein 9A-like [Phoenix dactylifera]
Swissprot	tr\|Q9LT31\|VPS9A_ARATH	2.00E-169	Vacuolar protein sorting-associated protein 9A
trEMBL	tr\|K4A933\|K4A933_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si035389m}
TAIR	AT5G09320_1	2.00E-154	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	1493389	1525384	-

Transcript Sequence
>GWHTAAEX017608 GTTCGAATTTCGAGTTCGCGTGTAGCATTTCATTGCTAGAGCGGATTAGCGCCTTCGAAGAAATGAACAAGGATAAATAGAGGTCGCTGACCGAGTCACATGGAGCTCACCTGATCGGAAAATCTTGGGAGCTGCTTTCAGATATTTTAAGATTACCACCAGATTATAACTCAGGAACACCTCCAGAGCGTTTCTCCTGATATCTGAATTTTTGCCTTAAAATTATTTTCCATTTACCGTTTGAGGACCTCCTATTTTACTATAGGATCCATCTTATCTTTGTTTTTCCATCGCGAATTTTCAGGTGAATTACCGGTCATTCCTCGTCGTTTTTTCGGCCATCCTGTCCGATGGACGGAGGCGGGGCATCGGATGCTTTTGGCGCGTCAACAGCTCCGCTAGCATGGCACGACTTTCTGGAGCGAATGCGTCATCCTTCTGCCGCAGACTTCGTTAAATCCATCAAGAGTTTTATTGTATCCTTTTCAAATAGGGCCCCTGATCCTGAAAAAGATAGTGCTGCTGTACAATATTTTCTTTCCAGTATGGAAGAAGCTTTTAGGGCTCACATGCTCTGGGCTGGTAGTTCGGAGGAAGAACTTGAAAGTGCTGGTGAGGGATTGGAGAAATATGTCATGACAAAGCTTTTTAATCGAGCGTTTGCTTCACTTCCAGAGGATGTGCAACATGATGAGGAGCTTTTTGAAAAGATAGCTCTGCTACAGCAATTTGTTAGACCAGAAAACTTGGACATAAAGCCAGCATTTCAAAATGAGACATCTTGGCTGCTTGCACAGAAAGAACTTCAGAAAATCAACATGTACAAAGCTCCTAGAGATAAACTTGTCTGCATCCTCAATTGTTGTAGAGTCATCAGCAACTTACTTTTAAATGTTTCCATTGCGTCAAATGCAAGTCCTCCTGGAGCAGATGAATTCCTTCCCGTTCTCATATATGTAGCTATAAAGGCAAACCCTCCTCAGCTTCACTCGAATCTTGTATACATTCAACGATACAGACGCCAAACTCGTTTGGTCTCTGAATCAGCTTACTTTTTTACAAACATACTGTCAGCAGAAGCCTTTGTTTGGAACATTGATGGGAAGTCTCTTTCATTGGACGAAACTGCCTTTCAAATTAAAATGGAGTCGGCTCGAGCCCAACTATTGGGCCTATCAACGGACACTCATGAGCAGAAGAAAAAGAAAGCTGAGAATGTTTTGGAGCACATAGCAGATGCGTCAAAATCTCAAGGAGAGGAGGCCTATACTTTCAAGGAGAGCAGACCTACCATATTGGATCTAGAGAAGAAAGGGGCTGCTGACCTTTTGAAGGATGGTGGGCTGACCGATAGTTTCAAAGAGTACCCATACTTGTATGCAAATGCAGGGGATCTGACCGTTAATGATGTTGAAAGTTTGCTCAGTTGCTATAAAAAGCTAGTAATCAAGTATGCTTGCCTTTCCAAGGGAATGGGCTTGAGCGTTTCCTACGTTAGGGATCCAAACTCTCAATTCGAAGCTAAAGTGGGAAATGATAGAGATTTATTTGATGTTTCTAAAGAAAAACCAAGCACTGGAATGCGTAGCGAACCAAGAACAGTCAGTTGTAACTCTGATAATAGTTCAACTGTATTTAGTACAGAAAATGCTGCAGCAAAGAGTACTTCAAATGCCCCTGATTCTCAAAAAGATTTCATGCATGAAAGTCTAAATAATTCTGTAGATGTTGTTGCTGTGAATGACAAATCAGATGAAATACTTCCATAGTACTGTGAAGGGCGCAATATTCCATGCCTGATGCCATTGCATGAACACATTATCTACGCTCTGAAAGCAGCATGTATCACAGTAGAACTTAAAGATGAATTGGGAAAGCAGTCTAACAGGTTGCTTTTAGTCCAGCTGAATTTTGGTTTGCTGTTTTCCTGCACCAAGCTTCCCTTCCAAGTACGTCTTTTCACTGTGTGGCATTGTCTGTGCTGCGAGTTTTCTGAATCAAGCCATATTGAGTGAATATGGTGAACTATATGTTCCTTATTTTGTCTTAAGTTTTTTCTTATTTCATTGCATGACCTTAATTTGAGGATGAGAAATGCTGCTGCACTTCCTGCACATTCTGGTTTACAATCATTGTCCCTCATATTTAAAAAAGCTGTAGAAGAAATAAGCAATACATATAACGAATTTTATGATTAGCAAGCGGTGCACTAGAAAAGTTGTTCTAATTGTGTTATAGCATTATACGTGACTTCTAATTGAATTTTACCATGTGATGAAGCAAAGTTTGCAGCATTCACCATAGTATTGCAAGCTAGAATTTGTGTAACTGTTTTTGGAGGCCATTTCTTGTCTTTAC

Network for GWHGAAEX017608

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02204.17	VPS9	147	249	8.20E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.970
SRP064423	SRR2545915	Juvenile tuber	43.350
SRP108465	SRR5643513	five period of Gastrodia elata	27.770
	SRR5643514	five period of Gastrodia elata	28.800
	SRR5643515	five period of Gastrodia elata	26.690
	SRR5643524	five period of Gastrodia elata	23.960
	SRR5643525	five period of Gastrodia elata	42.050
	SRR5643528	five period of Gastrodia elata	37.250
	SRR5643658	five period of Gastrodia elata	42.790
	SRR5643659	five period of Gastrodia elata	31.990
	SRR5643660	five period of Gastrodia elata	38.160
	SRR5643661	five period of Gastrodia elata	35.990
	SRR5643662	five period of Gastrodia elata	37.390
	SRR5643663	five period of Gastrodia elata	38.790
	SRR5643664	five period of Gastrodia elata	31.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.420
SRP279888	Gastro	Gastrodia elata tuber	56.59
	Juven	Juvenile tuber	44.24
	Mother_Gastro	Mother tuber of Gastrodia elata	62.88
	Mother_Juven	Mother tuber of Juvenile	65.27