Gene detail

Detail information of GWHGAAEX017609/evm.TU.scaffold_84.28

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672161326\|ref\|XP_008800474.1\|	PREDICTED: AT-rich interactive domain-containing protein 4-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q6NQ79\|ARID4_ARATH	AT-rich interactive domain-containing protein 4
trEMBL	tr\|M0SC47\|M0SC47_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P05790_001}
TAIR	AT3G43240	ARID/BRIGHT DNA-binding domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	1620714	1664830	+

Transcript Sequence
>GWHTAAEX017609 GGTTGAAAGAGTTAGAGCTGAGGTTCTACCTTATTACATAGCGCTTAATAAGCAATGTTCCAGTCTCTGGTTGACCCAAGAAAAAAATGTCGACTGGTTGCTGTGCTATGCGGAAATTCTTCTGGCAGACAAAGGGCGGTTGGGGATTCTGGGATGCAATATCCCTTCCCCGATCTCGCTACGAGTTTCATTGAGGCCAGGGCACTGATTAATCCAACGTTGGATCAGTTCCAAGATGTCCAGAGAGAAACATGCCCGGACATTCTCTACTTTCAGGGACAACAATTTGAGACTGAAGAAGTTGGCTCTCTTGTGTGGCGAAACACAGATGTGACTGACCCTGATTTCCTTAGTTCACTTGTTGTACCTCCGTTCCCCTCAATTGTTTATCTTGAGGCATCAAACAGTGACAAAATTGCAGAGGCACTGTGCTTGAAGGGAGTTCCTTGCGTAATTTACTGGAAAAATTCTTTCACAACTTATGTAGCATGTCATTTTCGTCAAGCTCTGTTTTCAGTTGCACCATGTTGTCATGCATGGGATGCATTTCAATTTGCATATGCTTCTTTTCGACTATATTGTTCCAAAAGTAAATGTATTTTGCCTGCAAGTTTCCAACAAGTTGATAGAAAATGTTTTCCTTGCATCATTGGAGATGCTCCTAAGAATCCGCCTGAGAAATCCATGTTTGGTGTAGAATCTTCTGCGTCGTCTCCCCCTAAAATACAAATACATGAGGAGTTTGTAAATGTAAATTTTCTGGTATGTGGCATTCCTTGTATATTGGATGCTTGCTTACTCGGTTCTTTGGAGGATGGTCTTAGTGCTCTCTTGAACATTGAAATTCGTGGAAGTAAACTTCATAACAAAGTCAGTTCGTTGTCACAGTCGTGTCTTGCTGCAACCTCACATGGAGATTATAAAATGAAATGTGACCTCATAACTTGCAGTTCTGCTTTTATCTCACTTCTGGTGTCGAGTAGTTTGCAAACTTGTGTTGATGATCAGCTTGTCGAAGATCTCATTAAGAGCGAACTTGTTGATCGGCAGTTAGTCCATGCTCAGCCATGCTGCAAGGAAAGTGAGTTCTGTTCTAGCCAACCTCTAAGTACCAATTGCATAGCTGCAGGAGCATCTGTTTTTGAAGTTTGCATGAAAATTCCATCTTGGGCTCTTCAGATTCTTAAGCACCTTGCATGTGAATTCTCTTGCCGGAGCCTTGTCAATCTTGGCATTGCAAGTATTCATGGATTTGCGGTTGCTTCCTTTGAAAAAGAAGATGCAGAGCGGATGCTTTTCGTTTGTTCTAAAGAAGTGAAAGTATTGTCCAAGGAACGCACTTTTTCTTCCATCCTTCCTATTTCATCCTCATTCACCAGTACTAAATTAAATGATGTACCTGAGATTGTGATTGAGGGAAGTTGGAAAGACTTTTGTACTCTTGATTGGCTCGCTAGCAAGAAACAGAAGATGACAAAAGGGGCTCATATGCAGGGATTAAAGGTCGCTGCAATGAGGCCCATTCCACATTCTCAAAGGCAAAAAAACATTTGTTTTCCCATTGAAAATTATGAAAAACAGCCAAATCTTGAGAACAAAGCTGCAGCCCTTAATAAATGTAAGAAGTTCTCAGATTCCCTGCCGAGATATGAGATAATCTCACATGATGGAGTTCAATTAAAACTTAGGAAGCATTCTTTAACCTCGAGAAAACATAATTCATCAAAACAAGGAAGCTCTGTATCAAAACCTGCCTCTTCGAAGCAAATAAGTTCAACAACAAAGTCAGCTTTTTTAGCTAATGAGCATTCTGCTAACAGATTAGCTTATTCTATTAAAAGAAGGTCTGACGCTAAATCTGATTTGGCAAAGCAGAGGATTTCATTAAACCCAATACCATTGAAGAGGCATGAGTGCAACCGATGCGCAATTTATGAGTGCTCAGAAGAAGAATTTTTGAAGGATTTGATGCAATTTCTCATCCTTAGGGGGCACCAAAGATTGGTTCCCCCAGGTGGTCTTTCTGAATTTCCTGGTGCTGTACTCAATACAAAGCGCCTTGATTTGCTTAATCTTTATAAAGAGGTGGTTACCAGGGGAGGCTATTATGTTGGAAATGGTATAAACTGGAGAGGACAGGTTTTCTCAAAGATGAGCAACCACTCAGTTAATAATAAAATGACTGGAATAACCTATGCTTTAAAAAGACACTATGAAACTTATCTGCTGGAGTACGAGCTAGCTCATACTGATGTAACTATTGATCACTGTGCTTTGTGTCAGAGTGGCACTCCTGGAGATTGGTTGAGCTGTGGTAAGTGCAACAAATGGGTTCATTTTGATTGTGATAAACGGTCACTAGGTTCTTTCAAGGATTATTCGAAGACAGATGGTTTTGACTACATCTGCCCCCACTGCGACTGGACATGCACATGAGTGCAATTGAGATATGGACTTATCTTCTATTCAATGCTTATAATGAGGGGCTTCCACTTCAGTAAGGCTTATGGCTCTTAATGTGTGCTGTAAAGTAGAAGCACAGCTGTAGGATCAATTATATCTGCTCCCCAGGTAAGACAACCGAGTGGGCCATTCAGAGTGGAGGGTGGCAACAAGTAGCTGATAGAACATAGTGAGAGCTGCTCCAATGAACATGGGCAGCAATGGCTCATAACAAAAACTAAATTTTTTATTGATGCAATTTTTTCTAAGAACATGTGAGCCCTATCTGGCGCGATGCACTATTTGAGCAGTGCATACTCGCAAAGCGTTTGTATTCCACAACCCAAACATTGATTTTAGAGTAAGGTTTGTTGTATTTTCTTTCTAAACAATCCTAAATTATCTTTTTGATGTTCATGCTTTTGGAGTTCAAGAGAACTATTGTTTTTCTTTTCTTTTTTTTCTTTTTT

Network for GWHGAAEX017609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.20	ARID	631	728	9.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.910
SRP064423	SRR2545915	Juvenile tuber	20.230
SRP108465	SRR5643513	five period of Gastrodia elata	12.760
	SRR5643514	five period of Gastrodia elata	14.080
	SRR5643515	five period of Gastrodia elata	12.670
	SRR5643524	five period of Gastrodia elata	13.860
	SRR5643525	five period of Gastrodia elata	19.360
	SRR5643528	five period of Gastrodia elata	20.540
	SRR5643658	five period of Gastrodia elata	24.250
	SRR5643659	five period of Gastrodia elata	15.370
	SRR5643660	five period of Gastrodia elata	16.180
	SRR5643661	five period of Gastrodia elata	13.760
	SRR5643662	five period of Gastrodia elata	14.930
	SRR5643663	five period of Gastrodia elata	17.950
	SRR5643664	five period of Gastrodia elata	15.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.780
SRP279888	Gastro	Gastrodia elata tuber	15.87
	Juven	Juvenile tuber	15.22
	Mother_Gastro	Mother tuber of Gastrodia elata	13.04
	Mother_Juven	Mother tuber of Juvenile	15.89