Gene detail

Detail information of GWHGAAEX017614/evm.TU.scaffold_84.34

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1870	Ubiquitin C-terminal hydrolase
nr	gi\|672109495\|ref\|XP_008790379.1\|	PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9C585\|UBP8_ARATH	Ubiquitin carboxyl-terminal hydrolase 8
trEMBL	tr\|F6HAA6\|F6HAA6_VITVI	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR	AT2G40930	ubiquitin-specific protease 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	1843238	1933548	-

Transcript Sequence
>GWHTAAEX017614 CTTAGCTGAGAGTCTGAATTCTTTCAGACGGAGGCGGGAGGAATAAACGTAAAACGCACAGCAGTCTGGAAAATTTCCAAACACCCAAAAATTGAAGCTAGACCTTGTCCAACAAGCTCAGTATCAAATATCTTGACTCTCGTCGCGAAATTTATGGACAGTCTCCCGGCCGACGATGCCGGAACTACCGATCAGGAGCCCGCATCTGAAGAAAACAGAGTTTATCTTGTACCCTACAGGTGGTGGAGGGAGGCGCAGGATCTGGGATCCGAGAATGGTGTTAGCAATGTGGCTCGAGGAATCCCGTACACTGCGTTGCCGTCGCCATCCTTGCATGGTGGGAGGATGCGGATCATCAACACTATTTTCAACTCGGATCTGGTGTTTAGTCTAAGGAGAGATGATTGCCTCATGATGGACGGCGCCGAGGAGGCTGTATCAGGGCGGAATTATGCTTTGATTCCGACTGACATGTGGTCACAGGCGCTCTGGTGGCATAAAGACGCCAACGGTGGAAACCAAGTTTTTCATGAAAATAGTTCAATTGATGTTTATCCTTTAAAGCTTAGAATTTCTGTCATGCGGGACACAAGTGTAATTACCGTTAGGATCAGTAAAAAGGACAATGCAATTGAAGGTTACAAACGTGCATTCAAAATCTTTTCTGTTGAGTCTGATACGGTGGTACACATTTATGATTTCTCTGCACAAGCAAATCTCATAATGATGAACGAATGGAATAGACAGCCTCTCGATGGTCAACGACTAGTAGACCATGAGGTTATTCTTGATTTACAATTGTATACTCGCTCAGAGTATTCAACTTGTAGAAATGAATGGAAAAAAGAAGACTTCGTGCAAAAATCTAGAATGTGTTATGGAGGCTTAATTTTGAGTAACGGCAGCATAACCCAGGCTGAATGTGATCTTTATTTTGGTACCTCAAAGGGTTATGTTTCATTTGGATTGATTGGTCTAGAAAATCTTGGAAACACATGCTTTATGAACAGTGCAGTCCAATGCTTGGCTCATACACCAAGGCTTGCTGAATACTTCTTAGGAGAATACATTAGTGAAATAAATGATCAAAATTCATTGGGGATGGGTGGTGAGCTTGCTTTAGCATTTGGGGAATTGCTTAGAAAATTGTCCTCTTCTAATAAAATTCCGGTAGTGCCAAGGGATTTTAAAGCGAAACTTTCTCGTTTTGCTCCACAATTTAGTGGTTTTAACCAGCATGATTCTCAAGAACTACTTGCTTTTTTATTAGATGGTCTCCATGAGGACCTTAATCGAGTTAAATGCAAGCCATATGTCGAAGTAAAGGATTCAGATGGTCGTCCTGATGAAGAAGTAGCCATTGAATACTGGCAAAATCATTTGGCTCGAAATGATTCTATCATCGTGGATGTCTTTCAGGGACAATACAGGTCCACTTTAGTTTGCTCTGTTTGCAACAAGGTATCTGTCACATTTGATCCATTTATGTATTTATCCTTACCACTTCCTACATCCACAACACGATCAATGACTGTGACAGTATTCGCTAGTGATGGTAATGCACAACCTTCTTCATACACAGTAAATGTGCCCAAAGATGGAATTTGCAGGGACCTTATTCATGCTTTAGGCTGTGCTTGTTCTTTGAGAAATGATGAAATCCTTCTAATAGCTGAGGTTTATTGTAATCGAATAATTCGGTACCTGGAAGATCCATCTGATGTGCTTACATTAATCAGAGATGAAGATCAACTTGCAGCTTACCGTCTTCTAAAAGATAAGGAAGAACTTCCATTAGTCGTGTTTAGTCACCAGCGTGAACAGGAGCGTTTCATCCAAAGTCTTCTCCCTCCAATTTGGAAGGCTTTCGGTGTTCCCCTAATTGGAAGGTTAATGAAATCTCCTTCTGGGGTTGCAATTCAGAACCTGTGGTTGAAGTTGTTGAATCCATTTCTTAAATCTTCAGCTGTTACCTCTAATTCTGATGAAGTTAATGGAACCAAATCCTTAGGTGAAGTTGTTGAGATTGAGACTGATAAATGCATCATTGATTCTGAAGAAGCTAGGAAAAGTAATAGAATCCCCGAGGTCAATTTTCAATTTTTATTGATGGATGAAAAAGGTGTAACAATGCTCACCGTAATTGAAATGAATGAGTTAAAGTTGGTGGAACCGCTTAAAAGATTGCATGTGCTTGTCTGTTGGCAAAACAAAACAATAAAAGATTATGATATTTCTCTTCTCAGCTCTTTGCCTGAAATTTACAAATGCAGCATCTTCACAAGGAGACCGCAAGAACCTGTTTCCCTATATGCATGCTTGGAAACCTTTCTGAAGGAAGAACCCCTTGGACCAGAGGACATGTGGTATTGTCCTAGCTGCAAGAAGCATCAGCTGGCTAGCAAGAAACTTGACCTCTGGAGGCTGCCAGAGGTTCTCGTTATTCATCTTAAGAGATTCTCTTATAACCGGTATGCAAAGAGCAAGCTGGAGGTGCTCGTGAACTTTCCCATTAGTGGTTTGGATCTATTCAAGTTTTTGGTCCACAAGACCCAACAGCCAAACAATCAGTATGAGCTATATGCCATTAGCAACCACTACGGAAACATGGGAGGTGGTCACTACACTGCTTATGTATATCATGATGCAGAGGATCAGTGGTACGACTTTGATGACCGCCATGTTTCTCTTATATCGCTAGACAGTATAAAGACATCAGCAGCTTATGTGCTCTTCTACAGGAAAGTTCGGGGCAGCCCTTCAGTTTCACCGAAGCACTAAATACATCTCATCAATTGAGCTAGACTGACTTAGAGGACTGTGATTTCGATTGTGGCCTTGCAATCTTCAATAGTACAAACCTGCTTTCTTAACAAATAATTCTTGGGATCGCTCTCATCAAAGAGTAGGTGCTTCTCTTCAAATATCTCATCATGCATGGATGGTTCGAATTGTCTGCATAAAGATCTTGAACAGCTTGAAGATTCGGTGCCTAAGGAGGAGCCTTATTTAGAGGAGGCGCAGCAGATTGGAACTGAAGATTCTTAGTTAATTATTATTATTTGTGAGGACGAGTGATGCTTTATTTCATTTATAACTTTAATCAAATGTTGCAATAAT

Network for GWHGAAEX017614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.28	UCH	273	862	1.90E-76

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0016579	Biological Process	protein deubiquitination
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.000
SRP064423	SRR2545915	Juvenile tuber	8.610
SRP108465	SRR5643513	five period of Gastrodia elata	5.650
	SRR5643514	five period of Gastrodia elata	4.840
	SRR5643515	five period of Gastrodia elata	6.360
	SRR5643524	five period of Gastrodia elata	5.930
	SRR5643525	five period of Gastrodia elata	3.990
	SRR5643528	five period of Gastrodia elata	3.550
	SRR5643658	five period of Gastrodia elata	3.830
	SRR5643659	five period of Gastrodia elata	5.070
	SRR5643660	five period of Gastrodia elata	4.800
	SRR5643661	five period of Gastrodia elata	4.850
	SRR5643662	five period of Gastrodia elata	4.420
	SRR5643663	five period of Gastrodia elata	4.120
	SRR5643664	five period of Gastrodia elata	4.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.110
SRP279888	Gastro	Gastrodia elata tuber	4.35
	Juven	Juvenile tuber	4.47
	Mother_Gastro	Mother tuber of Gastrodia elata	5.73
	Mother_Juven	Mother tuber of Juvenile	4.84