Gene detail

Detail information of GWHGAAEX017620/evm.TU.scaffold_84.42

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2071	2.00E-42	mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11
nr	gi\|743820573\|ref\|XP_010931816.1\|	0	PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q0WPF2\|PCFS4_ARATH	1.00E-90	Polyadenylation and cleavage factor homolog 4 {ECO:0000305}
trEMBL	tr\|F6H7L4\|F6H7L4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48172.1}
TAIR	AT1G66500	2.00E-42	Pre-mRNA cleavage complex II

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	2418981	2433415	-

Transcript Sequence
>GWHTAAEX017620 CAAAATAGAAGGAGAAATCCGATCCGCAGGATAGCGCAACAGTTTCGGCGGTAGAATAAGTGTCGTCCCTTCGTCCTCTTCCATGGCATCACGCGATCCATGCCCCTTCTGCAAACTCAAGGGATTTTGCTAGTAGCGCTTTTTTGGGAGAGATTGGTATCGTTATATCTCAGCGATGGATGACGAGAGATTCATGTCCGTTTCTGCCAGCCATGAAATCCCTAGATCTTTAGGGTTTTCGCAGGATCGCCTCGGCCGGCCGCCGCCCAATTTGTCGCCGCGTGCAACTCCGACGATCTTGGAACGCTTCCGCGCGATGCTTCGCAGCAGGGAAGACGAGTTAAGGGACGACGGAGATTACGATACGCCTCCACCGCCAGACGGAGATGAGATCGTGGGGATGTTTAGTGAACTACTCACCGATCTCACCTTTAACTCGAAGCCTATCATCACTGAGCTTACCATCATCGCTGGAGATCAGCGGGAGCATGCTAGAGGGATCGTGGAGGCTGTTTGCGACCGGATTGACGAGGTTCCACAAGATCAAAAATTGCCTGCCCTGTATCTTCTGGATAGTATAGTGAAGAACATTGGTGATGAGTATGTGAGGTATTTTGCTGCTAGGCTTCCTAAGATGTTTTGCCAGGCATACAATGATATCCACTCCAGCTTGCATGCTGCCATGCACCGCCTCTTTCGAACTTGGACGCAAGTGTTCCCCCATTCTGTATTAAACAAAATCAAGGATGAATTAAAGTTTCCTTCACCTGAAAACCAGAGACCAAGTGATTTGCTGGGTATACAAACGTCAGACAGTCCTCATCCATCCCATGGAATTCATGTTAATCCAAAATACTTGGAGGCACGACACCATATTGAGGACCCAGCGGATATTCTGCATTCAGGGGAAGTTCCTTCTGGAATTCAAGCTCCTGATCATAAATCATTCACTAAATATGGTGATCATAATTTGGATCACCTTGGATTCCAATCTTCAAACCTTAAAATGGTAAAAGAAGGTTCTCCACAGACACTGCATGGATCATCCATGGCTGGACAGGACGGACCATATTTTAGTTCACAGAGAAAAGTTGCAACACGGTTATCTCCCACAAGGTTTGAACTTAGGAGGTCTGCTTCTCCGCAAGTTCAAAGGTTCAAAAGGAGTTCTCCTGGACAGATGATTGAAGCGCCTTCTCATTGTTATTCTGAACTTGAATTTCAGTCTGACAGATCAAGTGAGAATAATGGTTGGTTTGGAAGGAGCATGTCAATAGATGATGGCGCCCAGCAACCAGTTGCTCTGACTGCATACAGTATGCACGGTAGACAGCGTCAAAGAGATCTAATTGATGCGTATGGAAATTATAGAGGCAAAAGTTCCATTTATGAGAGCTATCATAAGATTCCACGTGTCAATATAAATGGTTTAAAGGGTGAATCGAGAAAAATGGATTGGCAGAATTCCGAGGAAGAGGAGTATGTGTGGGAAGATATGAGCCCAACTCTTGGTGATCTGGGCAAAAGGAACAGCATCCAATCTGAACCAAGCGGTGGTAAATTAGAATTAATTAATTCTAATAGACCAGGTATCATAGCACAGAAATCTGATTTTAGAAGGCGCAGTTGGCCTGCTCCACCCACCAAAGATACAACTACTACTATTGATGACAGAATTGCGATTCAAGATTATAATCATGGACCAATGAATAGGATGCATGCTGATGATTCAGGAAGCACAATTGAACCATTTCGACATTATGCAAAATCCCATGTTCCTGAACATGGAAGTTTGCCGCACACATTCCATCACCCCATGCTGGATAATCTTAGCCCAAAATCTCAGGGAAGGCCATTTCAGTTGCCTTATTTTGTTAGTGGAGCAACACCTTCGGTAACTCACAAATGGCATAGTTCCTATGATAACTCTCACTCTACTGAGGCCCCGTTCTTGAAGTTTAGTGCTTCCCCTGACTCTCTAAATTTAGAGATGCAAACAATAGCTTCCCAAAAAACACACCAGCCTCCTTTTGCTCCTACATGGGCTCCTCAACCACATAAATCTCAGTCTTTGCAGTTACTTTCCACTCCTAACTTACAGGTGAATAATAACAAGCCGTTAGGCAACCCGCAACTCAATTTTTCTCTTCCTTTGTCTCTGCAGCAAGTCGATGCTAATGGAAAAAAAATATTAAGGCACCCAATACTGGAGACTCGTGGTGGCTTTATTCCATCAACACCAGCTCAAACAGCAGCCAATTTTACTCAACCCCTAATTAACTTACAGCCTCTTGGACAAAATGGTATCCTGGATTCTATTTTACCAAATCACATATCTGGAACGGCTATTTCTGCTGTACAGAATATACCCATGCCTCCGTTGCCTCCAGGGCCACCACCATTGTTATCACAACCCTTGCCTACATCCCAAAACAATTCTTCAGCGACATCTAATTCATCAGTGAGTGGGTTTTCAGGATTAATCAGTTCACTTATGGCCCAAGGTTTGATTTCGCTGATACCTCCATCTCAGTCTCAGACTATTGTGGGACTTGAGTTTAATGCTGATCTTCTTAAGATACGCCATGAATCTGCAATAAATGCCATGTATAGTGAACTTCCAAGACAATGTACTACATGTGGCCTGCGCTTTACATGCCAAGAAGATCATAGTAGTCATATGGATTGGCATGTAACTAAAAATAGAATATCCAAGAATCGTAAACAGAATTCATCACGCAAGTGGTTTGTAAGTGCCAAGGAATGGCTTTGTGGTGCAGAAACGCTGGGAGCTGATGTAGTTCCTGGTTTTTTGCCCACAGAGACAGTCCCAGACAGAAAAAAAGATAGAGAAATAGCCGTTCCTGCAGATGAAAATCAGACAGCCTGTGCATTATGTGGGGAGCCTTTTGAGGATTTTTATAGTGACGAGACTGAGGAGTGGATGTATAGGGGGGCAGTATATTTGAATTCTCCAAACTGGGACATAGAAGGTTTAGACCGGTCTCAGCTGGGACCTATTGTTCATGTCAAGTGTAAGTCAGAGTCTTCAGAAGGTTCTGGGCAAGCCTGATAATAGATGACCAGTGAGCGATGGTTAGATTACCACATTGTGACTTGTTCATCACCTTTTTCAATTATGCAAGTCACTTTTTTTAGTACCGGCTGGCAGTTGGAATCCATGCGTAGCTTCTCCTTAGTCTATCACCAAAAGTGAACTTTTCTTCACTTTTGGTTTTACTCAGTCAGCACTGTTGAGAGATTTGTCATCAGCGGGATTTTAGATTTTAAAAGATATTTGTAAATTACTTGGAGCAGCTTCCATCTGTCATCAATGGGGTATGCATAGGACAAAAAGTCTCCGGTAGCAAGGCTCCATTTGAAATGTAATGCTTGTACATGTAAAGTTGTATTATAGAGGCTAAATTCTATATTGTCGCAAGTATTCTGCTGATCGATGTTAAGGATTGGCATTTTTTTATTTAAATTATTTTAAAAACTCCCGCTATTTGGGCGTCCTGCCATTTTCTGCTTTGATTTCATGCCGTTTAGTATATTTACGATGAAATTCTTGCAAGTTCTATTCAACATTAAACCATTATTATGACTGCTGCTCTGCTGAGAAAATATGGCTAAATGCAGCAGCAGTCATCATCCTGAAACCAAAAGTGTAC

Network for GWHGAAEX017620

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04818.12	CTD_bind	125	178	8.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14400	PCF11	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.180
SRP064423	SRR2545915	Juvenile tuber	27.060
SRP108465	SRR5643513	five period of Gastrodia elata	15.400
	SRR5643514	five period of Gastrodia elata	14.320
	SRR5643515	five period of Gastrodia elata	14.440
	SRR5643524	five period of Gastrodia elata	15.030
	SRR5643525	five period of Gastrodia elata	19.990
	SRR5643528	five period of Gastrodia elata	16.660
	SRR5643658	five period of Gastrodia elata	16.160
	SRR5643659	five period of Gastrodia elata	16.390
	SRR5643660	five period of Gastrodia elata	16.930
	SRR5643661	five period of Gastrodia elata	17.250
	SRR5643662	five period of Gastrodia elata	16.880
	SRR5643663	five period of Gastrodia elata	16.520
	SRR5643664	five period of Gastrodia elata	17.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.610
SRP279888	Gastro	Gastrodia elata tuber	19.09
	Juven	Juvenile tuber	25.06
	Mother_Gastro	Mother tuber of Gastrodia elata	16.00
	Mother_Juven	Mother tuber of Juvenile	23.44