Gene detail

Detail information of GWHGAAEX017623/evm.TU.scaffold_84.47

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|719975515\|ref\|XP_010247817.1\|	9.70E-48	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Nelumbo nucifera]
Swissprot	tr\|Q9LW00\|MBD11_ARATH	1.00E-31	Methyl-CpG-binding domain-containing protein 11
trEMBL	tr\|W9RA09\|W9RA09_9ROSA	1.00E-41	Methyl-CpG-binding domain-containing protein 10 {ECO:0000313\|EMBL:EXB61339.1}
TAIR	AT3G15790	4.00E-31	methyl-CPG-binding domain 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	2594692	2638318	-

Transcript Sequence
>GWHTAAEX017623 TAAAGATTTCGGATCTGCTTTATGTGAGAAAGGAGTGGTAGGACTTGATGGGAGGCAGGAGCTGACCCCAAAATTGAGAAAACACTAGTTTGCTCACTTGAAAAGAAATAAATATAATCATTATTTATTGAGGCTGATTTTATTTGGGAACGATCGGACGGCTCGTTAGCAGGATAGAAGTTTCGCCACGGTGGATTCCAATCTGATTAAGGGCGTTGACAATTCCTTAAAAGTTGTTTGGGAGCGAGAACGGCAGAGGGTTTATGCTTCCATAAAACCAATTTCCGCAAAAAGTTTCCCCACATAAATATTTATATATATCACATCTTCGAAGCTGTTTGCACTGAGGGCGGGAAATCTTCTTATCGAGTTTTTGTGAAAAAGGTGCGCGAGGCGTAGAATGGCTGACGAGGTGAAATCTGAGAGGGAGCAGGTCGTCTCTGTTGAGTTGCCGGCTCCTCCTGGCTGGAAGAAGAAGTTTACTCCGAAGAAGGCTGGAACACCAAAGAGGAACGAGATAGTTTTTATTTCTCCCATTGGCGAGGAGATTCGAACCAAGACTCAATTGGACCTGTATCTTCGGTCTCAACTCGGAGGTCCTTCTGCTTCCGAATTTGATTGGGGATTTGGTGATGCCCCAAGACGGTCTGCTAGGCTTAGTGAAAAGGTAAAGGCAATGGAGGCTCTGGAGGAGGAACCTCCCAAGAAGCAAAAAAGGATTACAAGCTCTAAGAAGGACAATAAACAAAAAATTGATGCAGATGATGCACAGGCGGAGAAAGAGACAAGGAACAGTGATAATACAGCTGCAGAAGTGCCGGAAAGTGACGAAAACTCGGATATGAAAGATGCCGAGGATAGTTCCATGAAAGTAAATCCATCTCAGATGAACCGGGGAAAGCCTTCAATCTCAAAGAAAAAAACTAAACAGAAAACCCATGTAGATGCACAAGTGGAGAATAACCCCCCAGAAAGCAATGCTATAGAATCACAATCACTTGAGTGCAAAGAAGATGCTACAGATACCAAATATTTTGCTGAAACAATTGCGGAGGATAATATTAAGATGGATTTGAATGATGGGCAAGGAAAGAATGATGTTGATGCAGCAGCAGAGGATGAAGCGCTGGAAAGAGTGGAGGTAATGCACGCGGTTGATGGCTTAGAAGATGCAGATCTGAAGGATGCTGTCCATGGCTCTGTGCATGTAGAGGAAGCGACTTGTGCTAAAGTTCTTAAGGAGGATATCTCTATTTTAGATTCCAATGAAGGGACTAAACAAGAAAATGACGATGCAAGTGCACAAGTAGAGACATCTACGCAAGCTATAGGGAGTGTAGAAGATGCAGCTATGAAAGATGGTGAGGATTGTTCAGTTGTAGTAATTGAATTAACTGCTGCTAATGAAGCTAACAGGGAGGATAGTTCTAAAGCCGATTTAATTGAAGTGACCATACAGGAAATGGAAGGTGCCGAGGAGGCAGAGATAGAGGATGAAGTTCTGGAAACTGAAGTGGTGGTTATGCAAGCAGCCCAAGAATATGTGTTTGGTTCAGTAGAAAAGAAAGTAGACGTTTTTAAGGAGGATGATTTTAAAGTAGATTCAAATGAAGGAACTAAACCGGAAGAAAGTAATGTTGAGGCAGAGGCAGAGGCAGAGGCAGAGGATGAGGTGATACTGGAAAGTGATAACATATTCAATGCAGTTATGAAAGGCAATGTGGATGGTTCAGTTGAAGTGTCTGGCATTAATGCTATTGCAGAGGAAAATTCAAATGTGCACTCATATGAAAGGTCCGAGAAAGAAAAGGATGATACTGGCACAGAGGAAGACTACAAGGCGAATGTGGAAGATGCAGATATGATTAAAGATGCTGAAGGCGGCTCTGTAATAGTCATAGAGGAAGAGGCAGCTGCTAATGCTATTCTCGAGGACAGCTCTGCTAAAGTTAATTCAAATGGTATGCCAGCAGATGAGGATGAAGCTAATAAAACTAACCTGCAGCAAGATTATGCAGTAAGCCCAAATCGGAAGGAAGAGAATGAAGAGCAGATTAAAGACGCTGCCGTTATTATATCCATACCAGAGGCAGAAGAAAAGAATGGCATTGATTCCAGAGTACCACCTTGTGAGGCGGGTCCATATAAGGAGAACATATACATTGAAGGAGCGGAGGACGATGAAACATTGTTGAGCGATAATCACAAAGGCGAGCAGGTTTCACCCTCCAAAGCTATTTCTTCTGCTAACCACGTTGATTTGCCAAGTCCGCAGAAGGCTTCTGCAATTGTTTGAAAGAGGGGGTTCCTTTGCTGCCTGTTTAGCCCTTTCCACTGCCTTCATTATGGCCTTCTTTTATTGCTACGCTTATTAAATTAATGAGTTATCCACTGCATGTTTACATGCGATGAACCGCGCGACACGATCTTTTTATTGCAATGTTATTAAACTCAACAGTCCGTTCAGATGGGGACCATGACTCCTGGTGACTTGATGGCTTCAGATTGTACTTTCTATGCATGGTTCTGGTCTAATGTTGTGCTTAGCTACTATGAATAAAGCTTTAGATTAATCTATGAAGCTGCTGTGACTATATTGTTGACTCATGTTTTGGTTTTAGTCATTGCAGGCCTTCCACGACTTCAATTATGGTCTATTTTTGTGCTTTAGGCTACTGAGAGAATTTTGGAGCGTGCAGAGAAATCCCAATGGTCCAAAAGTGCAATGGCTGAATCCTAATGAGTTGCAATATTTGTAGTGCTTGAAAGCTAACTTGCAGATGCTGCCTCTTAAGCTAATCACAGGATAAATATATAGTTAGTGAAATTTGAATATTGAACTGCTAAATATTAAAGGTTAGTTGGTTGAGGGAAAGCCTAAATATTTGTTGGAAAAG

Network for GWHGAAEX017623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01429.18	MBD	14	74	1.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	73.140
SRP064423	SRR2545915	Juvenile tuber	57.680
SRP108465	SRR5643513	five period of Gastrodia elata	49.190
	SRR5643514	five period of Gastrodia elata	46.940
	SRR5643515	five period of Gastrodia elata	40.870
	SRR5643524	five period of Gastrodia elata	45.190
	SRR5643525	five period of Gastrodia elata	41.930
	SRR5643528	five period of Gastrodia elata	44.290
	SRR5643658	five period of Gastrodia elata	49.990
	SRR5643659	five period of Gastrodia elata	38.630
	SRR5643660	five period of Gastrodia elata	43.040
	SRR5643661	five period of Gastrodia elata	33.970
	SRR5643662	five period of Gastrodia elata	28.180
	SRR5643663	five period of Gastrodia elata	34.300
	SRR5643664	five period of Gastrodia elata	27.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	60.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.550
SRP279888	Gastro	Gastrodia elata tuber	26.25
	Juven	Juvenile tuber	32.34
	Mother_Gastro	Mother tuber of Gastrodia elata	28.08
	Mother_Juven	Mother tuber of Juvenile	34.96