Detail information of GWHGAAEX017629/evm.TU.scaffold_84.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1863 | 0 | Ubiquitin carboxyl-terminal hydrolase |
| nr | gi|743775036|ref|XP_010917891.1| | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X6 [Elaeis guineensis] |
| Swissprot | tr|Q9FPT1|UBP12_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 12 |
| trEMBL | tr|D7T3A6|D7T3A6_VITVI | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | AT5G06600 | 0 | ubiquitin-specific protease 12 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 3041980 | 3097307 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017629
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00917.25 | MATH | 59 | 178 | 1.50E-19 |
| PF00443.28 | UCH | 197 | 518 | 9.10E-46 |
| PF12436.7 | USP7_ICP0_bdg | 622 | 873 | 4.20E-72 |
| PF14533.5 | USP7_C2 | 883 | 1093 | 2.80E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11838 | USP7, UBP15 | FoxO signaling pathway | map04068 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 105.270 |
| SRR2545915 | Juvenile tuber | 111.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.000 |
| SRR5643514 | five period of Gastrodia elata | 66.200 | |
| SRR5643515 | five period of Gastrodia elata | 61.300 | |
| SRR5643524 | five period of Gastrodia elata | 70.840 | |
| SRR5643525 | five period of Gastrodia elata | 49.760 | |
| SRR5643528 | five period of Gastrodia elata | 58.620 | |
| SRR5643658 | five period of Gastrodia elata | 53.020 | |
| SRR5643659 | five period of Gastrodia elata | 72.080 | |
| SRR5643660 | five period of Gastrodia elata | 81.820 | |
| SRR5643661 | five period of Gastrodia elata | 76.470 | |
| SRR5643662 | five period of Gastrodia elata | 79.480 | |
| SRR5643663 | five period of Gastrodia elata | 75.710 | |
| SRR5643664 | five period of Gastrodia elata | 80.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 69.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 66.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 70.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 75.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 79.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 89.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 74.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 77.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 73.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 79.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 101.82 |
| Juven | Juvenile tuber | 132.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 76.33 | |
| Mother_Juven | Mother tuber of Juvenile | 137.99 |