Gene detail

Detail information of GWHGAAEX017631/evm.TU.scaffold_84.60

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2220	Predicted signal transduction protein
nr	gi\|672173074\|ref\|XP_008806655.1\|	PREDICTED: ALG-2 interacting protein X-like [Phoenix dactylifera]
trEMBL	tr\|M0RUE2\|M0RUE2_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P22120_001}
TAIR	AT1G15130	Endosomal targeting BRO1-like domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	3331041	3358236	+

Transcript Sequence
>GWHTAAEX017631 AACGAGGCTTAGTGACGAAGAAATTATTAGGCTCTTGTTCCGCAAGTTATCGACTACCGCCATTTACTATTCGCCGCAGTCCGGGAAGTGCTGCGCAATTGATCATACCGTTCTCCAGGCACGAGAAGAAGACGATCTCCAATTCTAGAAGAAGTGAGCCAGCGAACTATCCAAGCTCCGAGTCATGACGACGCCAGTGAATGTAATGCTCGCAGTGCACGAGAAGAAGACCCCCGCAGTCGACCTCTACCGTCCTCTCAGGCAATACATCGCCGTCAATTTCTCTGAACGCGAAGCTCAGATGGCCGAGGATGATCTTGACGCCGTTCGCCGGATGCGATCGGACATTGAGAAGCCACCCGATCCTTCGGCGGAGTCCCGTCGTGACCTTCTTCTATCTTACTTTCGCGCCCTAGTTCTCATGGAACCCCGCTTCCCTATCTCATCCGATCGATCCCACGTGAGTTCCATCACTTTCACTTGGCACGACGCCTTTAAGCCCTCGAAAAAGGTTTCTCTCCAGAGCATCTACCTAGAGAAATCCGCCATTTTGTTTAATATCGGCGCAGCCTATAGCCAGATCGCGCTATCGGGTGATCGATCTTCGCAAGCCGGGTTGAAGCAGGCGTGCAATGGCTTTCAGAGCGCTGCAGGGGCGTTTGGTATGCTACGTGAGACTGTTGCGCCCAAGCTTGCTGCCGTCGTCAGCAGCCCCTCTGTTGATCTATCGGTCGAGTGTGCAGGAATGCTTGAGCGGCTTATGCTCGCGCAGGCGCAGGAGTGCTTTTTTGAGAAGGTTATTGCAGATGGTAAGCCTCCTGGCCTATGCTCTAAGGTCGCACGGCAGGTTGGCCTATTCTATGAAGAAGCTTATGCAGCATTAAATGCTGCTCCACTTAACCAACATTTTGACAGAGCATGGGTTTCTCATGTTCAGTTGAAGGCGGCTCAGTTTTATTCCGAGGCTTGTTATAGATGCTCTTTAGAACTTCATGAGAAAGAAGAGATTGCAGAGGAAATAGCAAGGCTTAAAATCGGAATTAATGCACTAGCTGATGCAAAAAAATCAGCCAGAGGTGTTGCTGCACCTCTTCTTGATGCTGTTTCCAGGCTTGAAGGCAATATGAATCAGAGCCTTGAACGGGCCATTAAGGAAAATGATAGGGTTTATCTCATGCGAGTTCCACCCGGCAGTTCATTAGTTGCCCTACCTGCTGCTTCTCTTGTCAAGCCCGTGTCTATGACCGAAGTCTTAGATGCTACCAAGGAAAGGTTGTTCTCAAATATTGTACCTGATAATAGCACAAAATCCCTGTCAAGATATACAGAGATGGTTGATGATATTATCCGAACACAAGCTGAAAAATTGCAGCAGGGAAGCGAGATAACAAGGGTGAAGTTAAAGGAGATGGACCTTCCTGATTCCATCTTAGCACTGGAAGGCAGTTTTAGTTTGCCTATGGATCTCAAAGAAGATGTTGAAGCTGTGCAGATAAGTGGTGGCCCATCAGGTCTAGATGCTGAGTTGCAACAACTCATGGATTTGAAAAGGGTTAATCAGGAATTGCTACTCCAAACTGAGGAAATATTGCAAAAAGAAGCAAATGAAGACACTCAATTTCGCACACAGTTTGGAACAAAGTGGAGTAGACCTCAGTCCAACACCCTAACAAAGAATCTTTTGGATAGATTGAATAGATTTGCTGCGAACCTTAAGCAAGCCGCCGAAAGTGATGCTAGGATTGAACGAGCGATTAGAGATCATTACCCTCTCATGTCAATCCTTGATAATAAACCAATAGAATCTGCTCTTCCAAGTCTTGCAAGGCCAATAATGTCATTGGATAATAATGAAGACACCATAGTTGGAGCATTAAAACAAAGCTTGAGGCAGCTGGAGAATCTAGGTGCACAGAGGGCAGCTTTGGAAGATATGCTTAAAGAAATGAAAAGGAAGGATGATATATTACCAAAATTGTTGGCTACTAGTGGATCGCATGAAGATCTCTTTAAGAAAGAGATAACAAAGTATGATTCAATCCGTGAGGAAATTGCCCAAAATATAGTGGCCCAAGAGCAGTTGCTGTTTCAAATTCAGGCACAAAATGAGGAGTTCGCCGCCATATTCAATCTAGAAGATTACAAAGTTGCTCGGGACAAATGCTACAAACAAATCACGGCCGCTGTGGCAAAATATCGAGAAATCAATGACAACATCAACGAGGGAATGAAGTTTTATGTTACCCTTCAGGATGCCTTGAACAACGTGAAGCAGCAATGCAGTGACTTTGTGATGACCAGAAGCATTCAATGCCGGGAGATGGTTGAGGACGTGCAGAGGCAGATGGCTGGCCTCAGCTTTGCTTCAAGTCAGCCAAATCACATCCCGAGAGGCACCCCTCATTCGACGCCCGGTGGATTCTCTCAGCCTTACACAAATTACCCCCCGCATCAGCAGCAACACCAGCAACAGCAGCCACCACCTCCGGCCTACTACCAGCAGTATGCTAATCAGCCTCCGCCTGGGCCTGACTACAGCCAGCCTGCCTATCAAGGCTGGCGGCCCCCTTATTATAATAATGCTCATATGCAGCAGCAGCCGCCAGCTACCGGACACCCCCCTCCGCCGCCCTACAATGCCCCTCAGTATTATTCTCAGAGTGGTTACTACCGCCCCCATTAGACGTCTTTTGCGAGTCCCGAGGCATGTATTTTCTGCTTGTATCTAAAGAACCACTTTCTCATGCGTACATATTATTATATATTTATATCTATGTTTAAAATTTCATTTTCTATAACGTTGTCAATTATCTTTTGTATTTCGGAAAAATGTAAGAGATTTGTAAATAAATTTTCCATTGTTTGTTTTTCTGTGTTTGTCATAATTCGGGTTTGTAATTTATGGATTGTTTTTTAATACAAAATGCTGTTTGTATTTTTAAAATATTAATAGTGCTGTTATAAAT

Network for GWHGAAEX017631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03097.17	BRO1	8	388	6.70E-108
PF13949.5	ALIX_LYPXL_bnd	423	708	3.10E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12200	PDCD6IP, ALIX, RIM20	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.910
SRP064423	SRR2545915	Juvenile tuber	35.510
SRP108465	SRR5643513	five period of Gastrodia elata	53.870
	SRR5643514	five period of Gastrodia elata	58.900
	SRR5643515	five period of Gastrodia elata	55.650
	SRR5643524	five period of Gastrodia elata	60.280
	SRR5643525	five period of Gastrodia elata	64.370
	SRR5643528	five period of Gastrodia elata	55.160
	SRR5643658	five period of Gastrodia elata	70.260
	SRR5643659	five period of Gastrodia elata	42.370
	SRR5643660	five period of Gastrodia elata	43.570
	SRR5643661	five period of Gastrodia elata	47.450
	SRR5643662	five period of Gastrodia elata	39.160
	SRR5643663	five period of Gastrodia elata	41.340
	SRR5643664	five period of Gastrodia elata	48.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	77.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	50.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	62.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	62.320
SRP279888	Gastro	Gastrodia elata tuber	44.38
	Juven	Juvenile tuber	70.65
	Mother_Gastro	Mother tuber of Gastrodia elata	52.85
	Mother_Juven	Mother tuber of Juvenile	81.57