Detail information of GWHGAAEX017632/evm.TU.scaffold_84.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 5.00E-70 | MADS box transcription factor |
| nr | gi|595649780|gb|AHM92095.1| | 1.26E-103 | MADS-box protein 19 [Erycina pusilla] |
| Swissprot | tr|Q9FVC1|SVP_ARATH | 2.00E-82 | MADS-box protein SVP |
| trEMBL | tr|X2FD86|X2FD86_9ASPA | 5.00E-104 | MADS-box protein 19 {ECO:0000313|EMBL:AHM92095.1} |
| TAIR | AT2G22540 | 5.00E-70 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 3414033 | 3476096 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017632
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 1.50E-24 |
| PF01486.16 | K-box | 91 | 170 | 1.50E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.720 |
| SRR2545915 | Juvenile tuber | 39.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.410 |
| SRR5643514 | five period of Gastrodia elata | 40.950 | |
| SRR5643515 | five period of Gastrodia elata | 23.090 | |
| SRR5643524 | five period of Gastrodia elata | 19.920 | |
| SRR5643525 | five period of Gastrodia elata | 30.180 | |
| SRR5643528 | five period of Gastrodia elata | 8.450 | |
| SRR5643658 | five period of Gastrodia elata | 12.550 | |
| SRR5643659 | five period of Gastrodia elata | 19.920 | |
| SRR5643660 | five period of Gastrodia elata | 27.330 | |
| SRR5643661 | five period of Gastrodia elata | 29.330 | |
| SRR5643662 | five period of Gastrodia elata | 3.830 | |
| SRR5643663 | five period of Gastrodia elata | 3.350 | |
| SRR5643664 | five period of Gastrodia elata | 12.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.18 |
| Juven | Juvenile tuber | 12.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.15 | |
| Mother_Juven | Mother tuber of Juvenile | 9.00 |