Detail information of GWHGAAEX017635/evm.TU.scaffold_84.67
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-143 | FOG: PPR repeat |
| nr | gi|672164831|ref|XP_008802303.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g18475-like [Phoenix dactylifera] |
| Swissprot | tr|Q3E9F0|PP392_ARATH | 3.00E-143 | Pentatricopeptide repeat-containing protein At5g18475 |
| trEMBL | tr|F6H114|F6H114_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB45636.1} |
| trEMBL | tr|F6H114|F6H114_VITVI | 2.00E-19 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB45636.1} |
| TAIR | AT5G18480_2 | 3.00E-143 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000080 | 3550859 | 3552385 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017635
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 186 | 218 | 4.40E-06 |
| PF13041.5 | PPR_2 | 227 | 277 | 1.30E-16 |
| PF12854.6 | PPR_1 | 294 | 327 | 1.30E-10 |
| PF13041.5 | PPR_2 | 334 | 382 | 6.70E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.190 |
| SRR2545915 | Juvenile tuber | 2.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.190 |
| SRR5643514 | five period of Gastrodia elata | 4.530 | |
| SRR5643515 | five period of Gastrodia elata | 3.850 | |
| SRR5643524 | five period of Gastrodia elata | 4.230 | |
| SRR5643525 | five period of Gastrodia elata | 4.570 | |
| SRR5643528 | five period of Gastrodia elata | 3.680 | |
| SRR5643658 | five period of Gastrodia elata | 2.490 | |
| SRR5643659 | five period of Gastrodia elata | 6.100 | |
| SRR5643660 | five period of Gastrodia elata | 8.170 | |
| SRR5643661 | five period of Gastrodia elata | 8.270 | |
| SRR5643662 | five period of Gastrodia elata | 10.560 | |
| SRR5643663 | five period of Gastrodia elata | 6.990 | |
| SRR5643664 | five period of Gastrodia elata | 6.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.77 |
| Juven | Juvenile tuber | 5.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.13 | |
| Mother_Juven | Mother tuber of Juvenile | 4.06 |