Gene detail

Detail information of GWHGAAEX017636/evm.TU.scaffold_84.69

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|124028419\|ref\|YP_001013739.1\|	3.00E-172	DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM 5456]
KOG	KOG0214	0	RNA polymerase II, second largest subunit
nr	gi\|672108306\|ref\|XP_008784482.1\|	0	PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Phoenix dactylifera]
Swissprot	tr\|Q9LK40\|NRPD2_ARATH	0	DNA-directed RNA polymerases IV and V subunit 2
trEMBL	tr\|K3Y4R3\|K3Y4R3_SETIT	0	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU000431}
TAIR	AT3G18090	0	nuclear RNA polymerase D2B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000080	3596942	3644445	+

Transcript Sequence
>GWHTAAEX017636 GGTGTAAAAATGTTGCCTTCCCAGGCTAGCCTTGCCACGTCATTTCTCTAAAATCGCTCGCCGTTCGCTAAACAGCCGCTAAAACCTAAATCCCCTTCGGCTTCCCTCGTTCGTTCCCCGTCGCTTGCTTCTCTCGTCCACTTCCAACGAGAGCTGTTACTACGCCGGTCCCTCCATCTTCTCGGAAGGGAAGCGTGACGGACGTCCTAAATCCTGCTTCCACCACTCGCCCGCTTCGTGCTAGGGATTCTATGAAAAACTCCCATGGAATGTCTTCAATGTCTACTCATGCGAACCTGATGGAAGAGGGGCAGTCACCAGGCTCGCAGGATGGTGAAGCTGACTTAAGTTTGGAAGATAATTCAAAAGATAAATCTAGCTATGATTCAATGAGTGTTGATTCTCCAATTGATCACATGGAACAAATTGACATGAGCGTGGAAACACTTGAAAAATTCTTCAAAGATGCTTCAAGGGCCTTTTTTAATGACTATGGTCTTGTTAGCCACCAGATTAACTCATTTAATGAATTTGTAAAACATGGACTTCAAGAACTTTTTGATTCTCTGGGGGAAGTTTCAGTGGAACCGGACTATAATCCACAGGATGCCAAGGCTGATGGAGCATGGAAACATGCTACTGTTTCATTTGGGAAAGTCAGACTAGAAAAGCCAATTTTTTGGGTTGAAAAAAATGATATTGAAGAGCAGGAGCTTAAATTGACGCCAAAGCATGCTAGGCTACAGAATATGACTTATTCTTCTCAAATGAAAGTTAAAGTTAGAGTGCAGGTTTATGTACATCGTGTAAGTGACAAAGCCAAGACTGGTCAAGATGCAGGTGTTCATAAGATGGTAGTTGCAGATAAAGAAAGTGAGATTGTTTTGGGGAGATTGCCTGTGATGGTTAGGTCAGATCTTTGCTGGCTTCACTCCCAAGATAAAAACGATTGTTTCTTTGATCCTGGTGGATACTTCTTGATAAAAGGCATGGAAAAGACCTTCATTGCTCAAGAACAGAGGTGCATGAGTAGACTTTGGATCACAGATAAACCTTGCTGGACAGCACAGTATATGTCTGAGATGAAAAGGAGGAGAGTTTATATTAAATTGCTCGAATCTAATAAAGCTGAAGGTAACAGTAATGTAAAAATGATCAGTTTGTATTTTTTGTACGCTACAATGCCTATTTGGATAATGTTTTTTGCCCTTGGAGTGTCTTCTGACAAGGAAGTTTTTGACATGATGGATCTTGATGGCACCAGTACTGATGTCGTAAACATGATTTTGGTGACTATCAGAGATGCTGATGAGATGTGTGATGGCTTTCGCAGAGGAGATAAAGCTCGCGAGTTTGTAAACAAACTAATTAAAGATGCCAAGTTTCCACCCGCTGAGTCTTTTGATGAATATATTGATAAATTCCTGTTTCCTGGCATCACTGGATTTCGACAGAAAGCTCTTTTCCTCGGATACATGACGAAATGCCTTCTCTTATCTTACATGGGCAAGAGAAAGTGCGATAACAAAGATGATTTCAGGAATAAAAGGCTAGAATTAGCTGGTAAGCTGCTTTCAAGAGAGCTGTGGGCACACATAAAACATGCTGAGCGGCGTATGGTTAAAGCTATGCAGAGAGATTTAAATTCGGAATATGAATTGCAGTTTATTGAAAGATACTTAGATTCATCTATTATTACCAATGGTCTAAACAGGGCTTTTTCAACGGGTCAGTGGTGCCATCCTTATAAGAGGTCAGAGAGAACTGCTGGCATTGTTGCCACTCTTAGAAGGACAAATTCTCTCCAGTTAATTGCGGATCTTAGAAAAACACGTCAATCTGTTCTATATGCAGGAAAAGCAGGAGATGCCAGATATCCGAATCCTTCATATTTTGGAAGACTGTGTTTCTTGTCTACTCCAGATGGCGAAAACTGTGGGCTTGTAAAAAATTTGGCAATCACTGCCCTTGTTAGCTTAAAGCAATCTGAATCCTTTATTGAGAAGTTGACAGCATGTGGAATGGATAAATTGGAAGGGGCCTCTCCTTCTTCATTGGGAAAAAGGGTAAAGGTTCTACTAAATGGGGAATGGATCGGAGTCTGCCGAGATGCTGGGTCATTTGTCTCAAAATTTAAACATAGTCGCCGTTCGGGGAAAATCCATTCCCAGGTGGAAATTAAAAGAGACGAGCACCAAAAAGAGGTTCGTATTTTTTCTGATGCTGGAAGAATTCTACGGCCTCTTGTTATTGTCGAGAATTTGAAGAACATAAAAAATTTTAAAGGAGGATTTACCTCATTCCAGTCTCTCCTGGATGCAAAAATTATTGAACTCATAGGTGTGGAAGAGGAAGAGGACTGTCGAACTGCATGGGGGATAAAGTATCTTTATAAAAAGGATGATAAACAGCCTATTTCTAACTACACCCATTGTGAATTGGACCTTTCATTCCTATTGGCTTTGAGCTGTGGGATCATTCCATTTGCTAACCATAATTTTGCAAGGAGGGTACTTTACCAGGCAGAAAAACATTCTCAACAAGCAATTGGCTTCTCAACAACAAACCCTGATATTAGAGTTGATACTCTCACTCATCAGATGTATTACCCACAGAAGCCACTTTTCAGAACTATGACAGCTGAGTGCTTGGCCAAGTCCGATTACTGTTTGGGAAAGGGCCATGCTGTAAGACCTGAACTTTTCAATGGTCAAAATGCTATTGTTGCAGTAAATGTTCATCAGGGATATAATCAAGAAGATTCACTGGTTATGAATGAAGCTTCACTGCAAAGAGGGTTGTTCCGTACTGAACATTTTAGAAGCTACAAAGCGGATGTTGACAATAAAGAAACTTCTGCACGTCTTAAGCCAAAGGACAAAATAAACTTTGGCAAAATGCAAAGTAAAAGGGGTCGTGTAGACAGCCTTGAAGATGATGGACTGCCATATGTTGGGGCAAGCCTAAATAGTGGTGATATTGTTATAGGGAAGGTTGCGGAGTCTGGAGAAGATCATGGTGTAAAACTTAAGCATACTGAGAAAGGTATTGTGCAAAAGGTGGTGCTCTCTGCAAATGATGAGGGGAAGAACTTTGCAGTTGTAACATTGAGACAGGTACGGCATCCTCGGCTTGGGGACAAGTTCTCAAGCATGCATGGTCAGAAAGGTGTCATAGGTTTACTGGAGAAGCAGGAGAACTTTCCTTTCACTCTCCAGGGGATAGTCCCTGATATCGTCATCAACCCGCATGCCTTCCCCACCCGCCAAACGCCGGGCCAGCTGCTCGAGGCTGCTCTTGGCAAAGGAATCGCTTGCGGAGGCTCATCCACTTATGCAACTCCCTTTTCCACCCCCTCAGTCGATGTCATTTATGATCAGCTCCAACGGTCCGGGTTCTGTAGATGGGGAAGTGAGAAGGTGGTGAACGGGCGGACGGGGGAATTGATGCAGAGCATGATCTTCATGGGACCGACGTTCTACCAAAGGCTGATACACATGGCGGAGGACAAGGTGAAGTACCGCAACACGGGTCCAGTCCACCCTCTCACCCGCCAGCCAGTGGCGGACCGGAAAAGGTATGGCGGCGTCAAGTTCGGGGAGATGGAGCGCGACTGCCTGCTCGCGCACGGGGCAGCGGCGAACCTCTATGAGCGGATGTTCACACTCAGCGATTTCTCGCATATGCACATCTGCCAGACGTGCAGGAGGGCCGCCAACGTGATACAGAGGCCCGTGCTCGGCGGCCGCAAGATCAGAGGCCCGTACTGCGTCTTCTGCAAGTCCGCTGAGAACATCGTGAGGATTAACGTCCCTTACGGTGCCAAGCTCCTCTACCAGGAGCTCTTCAGCATGGGCATCTGCCTCAAGTTCGATACCGAGGTATGAAATTTCTCTCTTCTGTATTGTGCTTTTGTTTGGGATACTTGTGAATGACTTGTATTATTGTATGCTACTGGAAAGTAATGAAAGGTGTAGGGGGTGAGAGGCCCAGCTTCACTGCATCAATGAGAAAAAATGGATTAAATTGAGATGCAAGTAGGTAACCCTTGTATATTTTTCTTTCTTCAAGTGGAAGGAAGTTTTTGCGTATTGCTTGGATCTTTCAATTTTAGTATTACTTGGGAGAGAAGTTAGGGGAAATTAAATCAAAATGTACAATTTTCTTAAATTAAAATGTTGCAATGCTCTAGAAAGCTAATGCTATATGAAAAATGATATTTAGCTCT

Network for GWHGAAEX017636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04563.14	RNA_pol_Rpb2_1	82	470	1.80E-34
PF04561.13	RNA_pol_Rpb2_2	300	435	1.50E-08
PF04565.15	RNA_pol_Rpb2_3	511	573	5.20E-13
PF04566.12	RNA_pol_Rpb2_4	608	669	3.40E-22
PF04567.16	RNA_pol_Rpb2_5	684	731	7.20E-08
PF00562.27	RNA_pol_Rpb2_6	741	1109	5.90E-101
PF04560.19	RNA_pol_Rpb2_7	1111	1209	2.80E-27

Protein Sequence

>GWHPAAEX017636
MKNSHGMSSMSTHANLMEEGQSPGSQDGEADLSLEDNSKDKSSYDSMSVDSPIDHMEQIDMSVETLEKFFKDASRAFFNDYGLVSHQINSFNEFVKHGLQELFDSLGEVSVEPDYNPQDAKADGAWKHATVSFGKVRLEKPIFWVEKNDIEEQELKLTPKHARLQNMTYSSQMKVKVRVQVYVHRVSDKAKTGQDAGVHKMVVADKESEIVLGRLPVMVRSDLCWLHSQDKNDCFFDPGGYFLIKGMEKTFIAQEQRCMSRLWITDKPCWTAQYMSEMKRRRVYIKLLESNKAEGNSNVKMISLYFLYATMPIWIMFFALGVSSDKEVFDMMDLDGTSTDVVNMILVTIRDADEMCDGFRRGDKAREFVNKLIKDAKFPPAESFDEYIDKFLFPGITGFRQKALFLGYMTKCLLLSYMGKRKCDNKDDFRNKRLELAGKLLSRELWAHIKHAERRMVKAMQRDLNSEYELQFIERYLDSSIITNGLNRAFSTGQWCHPYKRSERTAGIVATLRRTNSLQLIADLRKTRQSVLYAGKAGDARYPNPSYFGRLCFLSTPDGENCGLVKNLAITALVSLKQSESFIEKLTACGMDKLEGASPSSLGKRVKVLLNGEWIGVCRDAGSFVSKFKHSRRSGKIHSQVEIKRDEHQKEVRIFSDAGRILRPLVIVENLKNIKNFKGGFTSFQSLLDAKIIELIGVEEEEDCRTAWGIKYLYKKDDKQPISNYTHCELDLSFLLALSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTTNPDIRVDTLTHQMYYPQKPLFRTMTAECLAKSDYCLGKGHAVRPELFNGQNAIVAVNVHQGYNQEDSLVMNEASLQRGLFRTEHFRSYKADVDNKETSARLKPKDKINFGKMQSKRGRVDSLEDDGLPYVGASLNSGDIVIGKVAESGEDHGVKLKHTEKGIVQKVVLSANDEGKNFAVVTLRQVRHPRLGDKFSSMHGQKGVIGLLEKQENFPFTLQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACGGSSTYATPFSTPSVDVIYDQLQRSGFCRWGSEKVVNGRTGELMQSMIFMGPTFYQRLIHMAEDKVKYRNTGPVHPLTRQPVADRKRYGGVKFGEMERDCLLAHGAAANLYERMFTLSDFSHMHICQTCRRAANVIQRPVLGGRKIRGPYCVFCKSAENIVRINVPYGAKLLYQELFSMGICLKFDTEV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0032549	Molecular Function	ribonucleoside binding
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.750
SRP064423	SRR2545915	Juvenile tuber	42.000
SRP108465	SRR5643513	five period of Gastrodia elata	23.160
	SRR5643514	five period of Gastrodia elata	23.560
	SRR5643515	five period of Gastrodia elata	21.440
	SRR5643524	five period of Gastrodia elata	21.250
	SRR5643525	five period of Gastrodia elata	21.370
	SRR5643528	five period of Gastrodia elata	19.560
	SRR5643658	five period of Gastrodia elata	20.710
	SRR5643659	five period of Gastrodia elata	28.210
	SRR5643660	five period of Gastrodia elata	31.070
	SRR5643661	five period of Gastrodia elata	24.170
	SRR5643662	five period of Gastrodia elata	30.340
	SRR5643663	five period of Gastrodia elata	28.440
	SRR5643664	five period of Gastrodia elata	33.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.750
SRP279888	Gastro	Gastrodia elata tuber	35.26
	Juven	Juvenile tuber	39.59
	Mother_Gastro	Mother tuber of Gastrodia elata	25.39
	Mother_Juven	Mother tuber of Juvenile	31.00